DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and wht-4

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:NP_494495.3 Gene:wht-4 / 173671 WormBaseID:WBGene00017179 Length:636 Species:Caenorhabditis elegans


Alignment Length:796 Identity:157/796 - (19%)
Similarity:282/796 - (35%) Gaps:277/796 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   349 GKMEVVKNVSFDMFEGQITVLMGHNGAGKTTLISMLAGFISPTSGTALINGFDIRQERRQAQRCI 413
            |:.||::|||.....|::..|||.:|||||||:::||..  .|:|...:....:..::...|:..
 Worm    49 GRKEVIRNVSGVAEPGEVLALMGGSGAGKTTLMNILAHL--DTNGVEYLGDVTVNGKKITKQKMR 111

  Fly   414 GLCP--QQNVLF-------KHLSSVSHIQLFSRLRGLRGAEVKSEVQNYLKKLNLQEKKRL---- 465
            .:|.  ||..||       :.|:..:|:    |::.....:....|:|.|:.:||.:.:..    
 Worm   112 QMCAYVQQVDLFCGTLTVREQLTYTAHM----RMKNATVQQKMERVENVLRDMNLTDCQNTLIGI 172

  Fly   466 --AARNLSGGTQRRLSVACSLCGGVKVLICDEPSTGLDPSARRELWRLILE-AKEGCTILLTTHQ 527
              ..:.:|.|.::||:.||.:....|:|.||||::|||.....|:.|.:|: |.:|.||::..||
 Worm   173 PNRMKGISIGEKKRLAFACEILTDPKILFCDEPTSGLDAFMASEVVRALLDLANKGKTIIVVLHQ 237

  Fly   528 LDDGEV-LGDRVVIISDGQLRCIGSLPFLKKQVDASCLITCEARKRCDLEKLTSLISRHVGTIQP 591
            ...... :..:|..::.|:....|:       ||..|                           |
 Worm   238 PSSTVFRMFHKVCFMATGKTVYHGA-------VDRLC---------------------------P 268

  Fly   592 FSIK-GRDVCYKLPLSKSKYFSSLFRDLESQMNILGVRGFSLSSVSLEEIFMSFGAEDLNSRQSG 655
            |..| |.|  :::|.|.:.                  ..|.:|.:|:..                
 Worm   269 FFDKLGPD--FRVPESYNP------------------ADFVMSEISISP---------------- 297

  Fly   656 GAEKRDDDDRDDDEENEVQDGNVRSCKKQWRAMMTKKVMALYDNKVYFLLLLLTPIVYYITTLMM 720
             ..:::|..|.:...:|.|:.::.:       .|.||.....|....:                 
 Worm   298 -ETEQEDVTRIEYLIHEYQNSDIGT-------QMLKKTRTAVDEFGGY----------------- 337

  Fly   721 ATKPHHSGRPTFNISDYGVDKFTILLSVPVSKSYTEERRADSIASLIKGKLKLIVVSEQIKDYVD 785
             ......|...:| |.:|. :|.|||.             .|:.:..:..|.|.|...||     
 Worm   338 -GDDEDDGESRYN-STFGT-QFEILLK-------------RSLRTTFRDPLLLRVRFAQI----- 381

  Fly   786 DKWKSREGRREINFVSMAIDTGDRTGLIGWVGPRHYVHAAPMILNL---VYNALAQEL----IGP 843
                              :.|....|::.|    ......|.|.||   :||. |:::    ..|
 Worm   382 ------------------LATAILVGIVNW----RVELKGPTIQNLEGVMYNC-ARDMTFLFYFP 423

  Fly   844 KISIEVTSVPFTLRKKED--------FLISNNGDIPIYVIGYVSIAMIIFSSAVIQERVSHMKML 900
            .:::..:.:|..||:.:.        ||..:..::|.|.|                        |
 Worm   424 SVNVITSELPVFLREHKSNIYSVEAYFLAKSLAELPQYTI------------------------L 464

  Fly   901 QEVSGLEMITYWLSHLAFDMVVFFILVLALLLPLYGYAPWYLLLCVLFFTGLAGLIFIYFLISML 965
            ..:.|  .|.||::.|...:..|                               |:|::..|:: 
 Worm   465 PMIYG--TIIYWMAGLVASVTSF-------------------------------LVFVFVCITL- 495

  Fly   966 SATFLAVSMILLSVII---GSLILMILGALALIFKMVYVAIYV-ANMHPLIAGYNCIQKCFHYMS 1026
              |::|||:..:...|   ..|::..:....|.. :|:...|| ||..|:.         :.|: 
 Worm   496 --TWVAVSIAYVGACIFGDEGLVVTFMPMFVLPM-LVFGGFYVNANSIPVY---------YQYV- 547

  Fly  1027 LCGSYISEAQNPLSENLTSDEMYCINPLAFLEPRCVCVNPMT-----------WPDMLVMLGT-- 1078
               |::|..::.. |.|.:::...|:.::    .|..:||:.           .|.:|...|.  
 Worm   548 ---SFVSWFKHGF-EALEANQWKEIDKIS----GCDLINPLNATTTGYCPASDGPGILTRRGIDT 604

  Fly  1079 ---AIILFLLIMFFEY 1091
               |.:|.|.:.||.|
 Worm   605 PLYANVLILFMSFFVY 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 75/311 (24%)
ABC_subfamily_A 339..556 CDD:213230 62/223 (28%)
ABC2_membrane_3 <821..1018 CDD:289468 39/215 (18%)
CcmA 1135..1450 CDD:224054
ABC_subfamily_A 1136..1354 CDD:213230
wht-4NP_494495.3 3a01204 49..636 CDD:273361 157/796 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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