DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and abca1

DIOPT Version :10

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:XP_004910916.1 Gene:abca1 / 100491942 XenbaseID:XB-GENE-1001143 Length:2311 Species:Xenopus tropicalis


Alignment Length:1782 Identity:455/1782 - (25%)
Similarity:776/1782 - (43%) Gaps:446/1782 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GFLAVQQALSQVHIKHKCKEFNKTQGDIKFPPIKDLPSP----PIFKSDNSSTLQDVGIMIIVII 74
            ||..:|..:.|..|:.: ....|..|..    ::.:|.|    .||....|.::.    :.:.:.
 Frog   596 GFSYLQDVVEQAIIRVQ-TGVEKRTGIY----VQQMPYPCYVDDIFLRVMSRSMP----LFMTLA 651

  Fly    75 IFFVVVSLTKSIVEEKELQLKVTLNLMGVGSCLQWVAWYIQTFIIFLIGSSIITLFWKL--VLPN 137
            ..:.|..:.|.||.|||.:||.|:.:||:.:.:.|::|:|.:.|..|:.::::.|..|.  :||.
 Frog   652 WIYSVAVIIKGIVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLMSAALLVLILKTGNLLPY 716

  Fly   138 SEISFMPFTHWSMALFVLLVLSHCTICFSFLMSSLISTTYRISLVTFLALIATYLPFLILHSKGC 202
            |:.|.: |..  :::|.::.:|.|     ||:|::.|.....:....:.....|||:::     |
 Frog   717 SDPSVV-FVF--LSVFAVVTISQC-----FLISTIFSRANLAAACGGIIYFTLYLPYVL-----C 768

  Fly   203 ---SEGLNVFLSLFLLSGLQVLVVG-----ICMWEDYGEGLQWGNLFETSWPGGTLSVGYILLVM 259
               .:.:...|.:| .|.|..:..|     ..:.|:.|.|:||.||.|:.......::.....:|
 Frog   769 VAWQDYVGYTLKIF-ASFLSPVAFGFGCEVFALLEEQGVGVQWDNLLESPLEENGYNITTSGFMM 832

  Fly   260 ILASFLSLLLCLYLEKIRPGPYGVPQPWHFPCTRC--CSTESLLPYSRLFNRIFGIYSAAPDEER 322
            :..:.|..::..|:|.:.||.||:|:||:||.|:.  |..|     .:.:|:...:...:.:   
 Frog   833 LFDTLLYGIMTWYIEAVFPGQYGIPRPWYFPFTKSYWCGEE-----CKEYNQPHTVQKGSSE--- 889

  Fly   323 PDLQLIEPDPVDKIAGVQIRGLSKTF--GKMEVVKNVSFDMFEGQITVLMGHNGAGKTTLISMLA 385
               ..:|.:|.....||.|:.|.|.:  ||...|..::.:.:|||||..:|||||||||.:|:|.
 Frog   890 ---VCMEEEPSHLPLGVSIQNLVKIYRNGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILT 951

  Fly   386 GFISPTSGTALINGFDIRQERRQAQRCIGLCPQQNVLFKHLSSVSHIQLFSRLRGLRGAEVKSEV 450
            |...||:|||.|...|||.|....::.:|:|||.||||..|:...||..::||:||...:||:|:
 Frog   952 GLFPPTTGTAYIMKKDIRTELNSIRQNLGVCPQHNVLFDALTVEEHIWFYARLKGLSEEKVKAEM 1016

  Fly   451 QNYLKKLNLQEKKRLAARNLSGGTQRRLSVACSLCGGVKVLICDEPSTGLDPSARRELWRLILEA 515
            :..:..:.|..||:.....||||.||:||||.:..||.||:|.|||:.|:||.:||.:|.|:::.
 Frog  1017 EQMVNDVGLPHKKKYKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLIKY 1081

  Fly   516 KEGCTILLTTHQLDDGEVLGDRVVIISDGQLRCIGSLPFLKKQV------------DASCLITC- 567
            ::|.||:|:||.:|:.::||||:.|||.|:|.|:||..|||.|:            :.|.|.:| 
 Frog  1082 RQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKRDNDSSLSSCR 1146

  Fly   568 ----------------------------------------------------EARKR-------- 572
                                                                ||:.|        
 Frog  1147 NSSSTMSYLKKESSKQTACKQHPSPMIAAPSASGTTAAVITKHSKHTAGQKKEAKDREDSVSQSS 1211

  Fly   573 ------------------CDLEKLTSLISRHVGTIQPFSIKGRDVCYKLPLSKSK--YFSSLFRD 617
                              .|:..:::||::||...:.....|.::.|.||...:|  .|..||.:
 Frog  1212 SDAGLGSDHESDTMTIGLTDVSAISNLINKHVPEARLVEDIGHELTYVLPYEAAKEGAFVELFHE 1276

  Fly   618 LESQMNILGVRGFSLSSVSLEEIFMSFGAED--LNSRQSGGA----EKR---------------- 660
            ::.:::.||:..:.::..:|||||:.. |:|  :::..|.|.    .||                
 Frog  1277 IDDRLSDLGISSYGIADTTLEEIFLKV-ADDTGVDAETSDGTLPARRKRYAFGDHQSCLRPFTED 1340

  Fly   661 ---DDDDRD-DDEENEVQ-----DGNVRSCKKQWRAMMTKKVMALYDNKVY-------FLLLLLT 709
               |.:|.| |.|..|..     ||......|.|..|..:....|:...:|       |...::.
 Frog  1341 DAFDTNDSDMDPESRETDYLSGIDGKGSYQLKSWNLMRQQFTALLWKRLLYAKRSRKGFFAQIVL 1405

  Fly   710 PIVYYITTLM--------------------------------------------MATKP------ 724
            |.|:.:..|:                                            :..||      
 Frog  1406 PAVFVLIALVFSLIVPPFGKYPSLELEPWMYDEQYTFFSNDAPDDQGTQALLKALIDKPGFGTAC 1470

  Fly   725 --HHS-----------------------------------------------------------G 728
              .||                                                           |
 Frog  1471 MEGHSVMKVSCSGEEEEWSTQFVSQSVMDLFLNGNWTMENPSPSCECSSDKRKKMLPICPPGAGG 1535

  Fly   729 RPTF----------------NISDYGVDKFTILL------------------SVPVSKSYTEERR 759
            .|.|                |||||.|..::.::                  |:..|.|......
 Frog  1536 LPPFQRRQNTSDILQNLTGRNISDYLVKTYSQIIEKSLKNKIWVNEFRYGGFSLGASNSPALPPN 1600

  Fly   760 ADSIASL--IKGKLKLIVVSEQIKDYVDDKWKSREGRREINFVSMAIDTGDRTGLIGWVGPRHYV 822
            .:.:||:  ||.:|:| ..:.....::|......:|          :||.|...:  |...:.: 
 Frog  1601 EEVVASINHIKKRLEL-PQNGAANRFLDSFGAFMKG----------LDTKDNVKV--WFNNKGW- 1651

  Fly   823 HAAPMILNLVYNALAQELI-----GPKISIEVTSVPFTLRKK---EDFLISNNGDI-----PIYV 874
            ||....||::.||:.:..:     .....|...:.|..|.|:   |..|::.:.|:     .|:.
 Frog  1652 HAVGAFLNVMNNAILRSKLREGEDPASYGITAFNHPLNLTKEQLSEVALMTTSVDVLVSICVIFA 1716

  Fly   875 IGYVSIAMIIFSSAVIQERVSHMKMLQEVSGLEMITYWLSHLAFDM----------VVFFIL--- 926
            :.:|..:.::|   :||||||..|.:|.:||::.:.|||::..:||          ::.||.   
 Frog  1717 MSFVPASFVVF---LIQERVSKAKHMQCISGVKPVIYWLANFVWDMCNYVVPATLVIIIFICFQQ 1778

  Fly   927 ----------VLALLLPLYGYAPWYLLLCVLFFTGLAGLIF-IYFLISMLSATFLAVSMILLSVI 980
                      ||||||.|||::             :..|:: ..|:..:.|..:    ::|.|| 
 Frog  1779 DSYVSSSNLPVLALLLLLYGWS-------------ITPLMYPASFIFKIPSTAY----VVLTSV- 1825

  Fly   981 IGSLILMILGALALIFKMVYVAIYVANMHPLIAGYNCIQKCFHYMSLCGSYISEAQNPLSENLTS 1045
              :|.:.|.|::|.....::....::|::.::.....|   |.:..|....|...:|....:...
 Frog  1826 --NLFIGINGSVATFVLELFTNNKLSNINEILKSVLLI---FPHFCLGRGLIDMVKNQAMADALE 1885

  Fly  1046 DEMYCINPLAFLEPRCVCVNPMTWP----DMLVMLGTAIILFLLIMFFEYGSCVWYRCKGCCPYS 1106
                     .|.|.|  .|:||:|.    ::..|....::.|.:.:..:|...:..|     |.:
 Frog  1886 ---------RFGENR--FVSPMSWDLVGRNLFAMAVEGVVFFAITLMIQYRFFIKPR-----PVN 1934

  Fly  1107 SK---GSIEDPKVSREAEKIRAMDADQIGTRALVVNGVSKKYGCDQL-AVNNISFALKPSHCVGL 1167
            :|   ...||..|:||.::|.....:.|    |.:.|::|.|...:. ||:.:...:.|..|.||
 Frog  1935 AKLPPVVDEDEDVARERQRINEGGRNDI----LELKGLTKIYRMKRKPAVDRLCVGIPPGECFGL 1995

  Fly  1168 LGPNGAGKTTTFKMIVGEHSIDKGNIYISGYSMRMKRNKAMKELGYCPQSDSFFEFLTGRQLLKV 1232
            ||.|||||||||||:.|:..:..|..::..:|:....::..:.:|||||.|:..|.||||:.|::
 Frog  1996 LGVNGAGKTTTFKMLTGDTDVTAGEAFLKNHSILRNIHEVHQNMGYCPQFDAINELLTGREHLEL 2060

  Fly  1233 FLLIWGFPSKDLNKRCEKLADQFGFRKHLDKKITYYSGGTKRKINAAVA-CGANSLICLDEPSAG 1296
            :.|:.|.|.|::.|..|....:.|..|:.:|....||||.|||::.|:| .|...::.||||:.|
 Frog  2061 YALLRGVPEKEVCKVAEWAIRKLGLVKYSEKHAGNYSGGNKRKLSTAIALIGGPPVVFLDEPTTG 2125

  Fly  1297 VDPASRRHVWTIINEVAQQGKAVLLTSHNMDEINALCSKSVILVDGSIYAMGSVQHVKNKIAKGM 1361
            :||.:||.:|.....|.::|::|:||||:|:|..|||::..|:|:|....:|||||:||:...|.
 Frog  2126 MDPKARRFLWNCALSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFKCLGSVQHLKNRFGDGY 2190

  Fly  1362 TLKL-VVNVQPDNMVAMLTKIEDDIYMTYPNAELKEKYEFSGRLTFQI-SKDTSWSEIFEYVEGN 1424
            |:.: :....||     |..:|:.....:|.:.||||:.  ..|.:|: |..:|.:.||..:..|
 Frog  2191 TIIVRIAGSNPD-----LKPVEEFFSHAFPGSVLKEKHR--SMLQYQLRSSQSSLARIFSILSKN 2248

  Fly  1425 RSSWHLEDYSLSQPSLEDAFEEIAEER 1451
            :...|:||||:||.:|:..|...|:::
 Frog  2249 KKRLHIEDYSVSQTTLDQVFVNFAKDQ 2275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 rim_protein <81..1451 CDD:130324 442/1709 (26%)
abca1XP_004910916.1 rim_protein 1..2272 CDD:130324 454/1777 (26%)

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