DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42816 and abca3

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:XP_004918068.1 Gene:abca3 / 100490925 XenbaseID:XB-GENE-1010698 Length:1720 Species:Xenopus tropicalis


Alignment Length:1553 Identity:464/1553 - (29%)
Similarity:751/1553 - (48%) Gaps:178/1553 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GSYPLY-KTGFLAVQQALSQVHIKHKCKEFNKTQGDIKFPPIKDLPSPPIFKSDNSSTLQDVGIM 69
            |..|.| :.||||:|..:.:..:::...|..:...|.....|:..|.||.........:|:...:
 Frog   217 GGTPGYQREGFLAMQHEVDRAIMRYHANESGRLLLDNIDVAIRRFPYPPYVNDLFILAIQNQLPL 281

  Fly    70 IIVIIIFFVVVSLTKSIVEEKELQLKVTLNLMGVGSCLQWVAWYIQTFIIFLIGSSIITLFWKLV 134
            ::::...:..:|:.:::|.|||.:||..:.:||:.|.|...||:|..|::.|:....:||. ..:
 Frog   282 LLMLSFTYTSLSIVRALVLEKERKLKEYMRVMGLSSWLHSTAWFIHFFLLLLVSVFFVTLL-LCI 345

  Fly   135 LPNSEISFMPFTHWSMALFVLLVLSHCTICFSFLMSSLISTTYRISLVTFLALIATYLPFLILHS 199
            ..:||.:.:..:..|:....:||.|..||.|||::||..|.....:.........:|:|:..:..
 Frog   346 QVSSEGAVLTRSDPSLVFVYILVFSVSTISFSFMISSFFSRANMAAAAGGFLYFLSYIPYFFISP 410

  Fly   200 --KGCSEGLNVFLSLFLLSGLQVLVVGICMWEDYGEGLQWGNLFETSWPGGTLSVGYILLVMILA 262
              ...:.|..|...||...|:.:....|.|:|..|.|.||.|||.........::|.:|.:::|.
 Frog   411 WYDELNHGAKVSSCLFSNVGMAMGAQLIGMFEGKGTGAQWSNLFTPVSVDDNFTLGQVLQMLMLD 475

  Fly   263 SFLSLLLCLYLEKIRPGPYGVPQPWHFPC---TRCCSTESLLPYSRLFNRIFGIYSAAPDEERPD 324
            ..|..|:..|:|.:.||.|||||||:| |   :..|.|..|         :.|:  ...|:|.|:
 Frog   476 CVLYFLVGWYVESVMPGDYGVPQPWYF-CFLPSYWCGTPRL---------VEGL--EKEDDEDPE 528

  Fly   325 LQL----IEPDPVDKIAGVQIRGLSKTF---GKMEV-VKNVSFDMFEGQITVLMGHNGAGKTTLI 381
            ..|    :|.:|.|.:.|::|:.|:|.:   ||..: |::::.:|:|||:|||:|||||||:|.:
 Frog   529 KALKGEYLEEEPSDLVPGIRIKHLTKVYHASGKKRIAVRDLTLNMYEGQVTVLLGHNGAGKSTTL 593

  Fly   382 SMLAGFISPTSGTALINGFDIRQERRQAQRCIGLCPQQNVLFKHLSSVSHIQLFSRLRGLRGAEV 446
            |||.|...|:||...|.|::|.::....:|.:|||||.:|||:.|:...|:..::.|:|......
 Frog   594 SMLTGLSPPSSGECYIGGYEITRDTALIRRSLGLCPQHDVLFQGLTVEEHLYFYAGLKGCPRWCC 658

  Fly   447 KSEVQNYLKKLNLQEKKRLAARNLSGGTQRRLSVACSLCGGVKVLICDEPSTGLDPSARRELWRL 511
            ..||:..|:.|.|:||:...:..|||||.|:||:..:|.||.||::.|||::|:||::||:.|.|
 Frog   659 PEEVEKILQILRLEEKRNALSTQLSGGTCRKLSIGIALIGGSKVVMLDEPTSGMDPASRRDTWEL 723

  Fly   512 ILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQLRCIGSLPFLKKQVDASCLITCEARKRCDLE 576
            :.:.|...|:|||||.:|:.::||||:.|::.|||:|.||..|||.:..|...:.......|.:|
 Frog   724 LRQHKHDRTLLLTTHFMDEADILGDRIAILAQGQLQCCGSPLFLKCKYGAGYHMVMVKEPHCQVE 788

  Fly   577 KLTSLISRHVGTIQPFSIKGRDVCYKLPLSKSKYFSSLFRDLESQMNILGVRGFSLSSVSLEEIF 641
            .:|.||:.:|......|..|.::.|.||...:..|..||.:||.:...||:..:..|..::||:|
 Frog   789 DITHLITSYVPNATLESNAGAELSYILPKESTHRFEPLFSELELRREELGIASYGASVTTMEEVF 853

  Fly   642 MSFG------------------------AEDLNSRQSGGAEKRDDDDR---DDDEENEVQDGNVR 679
            :..|                        |.|..:.:|.......:|..   .:|..|...:|...
 Frog   854 LRVGKLVDTSLDIQAIQLPPLQYQHERRANDWGTEESCSMSDCTEDSGTLITEDCSNIKLNGKCT 918

  Fly   680 SCKKQWRAMMTKKVMALYDNKVYFLLLLLTPIVYYITTLMMA---TKPHHSGRPTFNIS--DYGV 739
            ...:|:.|:..|:....:.|....:...|.|:|:  |||.:.   |.|.....|..::|  .|| 
 Frog   919 LWCQQFYALFVKRAAYSWRNWKMVVGQFLVPLVF--TTLALVVGKTFPGPQDSPPLDLSLVPYG- 980

  Fly   740 DKFTIL-LSVPVSKSYTEERRADSIASLIKGKLKLIVVSEQIKDYVDDKWKSREGRREINFVSMA 803
              :|:: .|:|.:.|...:..||:......|:.   :..:::.|.:|:...:|.......|....
 Frog   981 --YTVVPYSLPPNASTLLQSLADNFRDQFSGQQ---MEPQEVLDDLDNYLLTRASDEGALFAERC 1040

  Fly   804 IDTGDRTGLIGWVGPRHYV---------HAAPMILNLVYNALAQELIGPKISIEVTSVP---FTL 856
            :...|...|    |.|..|         ||....|.||.|||.:.:.||:.||.||:.|   .|.
 Frog  1041 LCAADIQNL----GSRIKVTARFNNQAYHAVASALALVDNALFKLIAGPEASISVTNYPQPRNTT 1101

  Fly   857 RKKEDFLISNNGDIPIYV---IGYVSIAMIIFSSAVIQERVSHMKMLQEVSGLEMITYWLSHLAF 918
            ...:|.|:.......|.:   .|..|:|. .||..::.||....|.:|.|||...::||||.|.:
 Frog  1102 ETAQDQLLEGQAGFAIAINLLYGMASLAS-TFSLLLVGERAVKSKHVQFVSGASALSYWLSALTW 1165

  Fly   919 DMVVFFI---LVLA--------------------LLLPLYGYAPWYLLLCVLF-FTGLAGLIFIY 959
            |::.|.|   .:||                    |:|.|||:|...|:....| ||..|......
 Frog  1166 DLLNFLIPCTFMLAVFQAFDVRAYTEEHHLVDVILMLLLYGWAVIPLMYLFSFLFTSTATAYTRL 1230

  Fly   960 FLISMLSATFLAVSMILLSVIIGSLILMILGALALIFKMVYVAIYVANMHPLIAGYNCIQKCF-- 1022
            .:.::||.|     ...|||.|.|:..:.|..|:.|...|::         ::..| |:.:.|  
 Frog  1231 TIFNILSGT-----ASFLSVTIMSIPALGLVDLSHILDQVFL---------VLPNY-CLGRSFSD 1280

  Fly  1023 -----HYMSLCGSYISEAQNPLSENLTSDEMYCINPLAFLEPRCVCVNPMTWPD--------MLV 1074
                 |.:..|.|....|....:.|:|..:.|                 .:|..        .:.
 Frog  1281 FYQNYHLLKFCRSSPRSAIICQAFNITCQDNY-----------------FSWSSPGVGRYLTAMA 1328

  Fly  1075 MLGTAIILFLLIMFFE-----YGSCVWYRCK--GCCPYSSKGSIEDPKVSREAEKIRAMDADQIG 1132
            :.|:|.:..|.|:..:     |..|..|:..  ...|.|.....||..|:.|.:|:.....:|:.
 Frog  1329 VQGSAFLCLLFIIESQIFCRLYNLCRSYKEHRWASLPESPVSPPEDRDVADERKKVLESPLEQLS 1393

  Fly  1133 --TRALVVNGVSKKYG--CDQLAVNNISFALKPSHCVGLLGPNGAGKTTTFKMIVGEHSIDKGNI 1193
              :..||:..:||.||  ...|||:.||.|:....|.||||.|||||||||:|:.|:.::..|:.
 Frog  1394 ALSSPLVIRELSKVYGRRALVLAVDRISLAVGRGECFGLLGFNGAGKTTTFRMLTGDETVSSGDA 1458

  Fly  1194 YISGYSMRMKRNKAMKELGYCPQSDSFFEFLTGRQLLKVFLLIWGFPSKDLNKRCEKLADQFGFR 1258
            ||.|||:.....|..:.:|||||.|...:.:|||:.|.::..:.|.|...:|...|.:.......
 Frog  1459 YIDGYSILRHIKKVQQRIGYCPQFDPLLDHMTGRETLCMYARLRGVPEGYINSCVENMLRGLLLE 1523

  Fly  1259 KHLDKKITYYSGGTKRKINAAVA-CGANSLICLDEPSAGVDPASRRHVWTIINEVAQQGKAVLLT 1322
            .|.:|.:..||||.|||::|.:| .|..|:|.:||||.|:||.:||.:|..:....:.||||::|
 Frog  1524 AHANKLVRTYSGGNKRKLSAGIALIGGPSVIFMDEPSTGMDPVARRLLWDAVTRTRENGKAVIIT 1588

  Fly  1323 SHNMDEINALCSKSVILVDGSIYAMGSVQHVKNKIAKGMTLKLVVNVQPDNMVAMLTKIEDDIYM 1387
            ||:|:|..|||::..|:|:|.:..:||.||:|||...|.||....:...:.::|    .:|.:..
 Frog  1589 SHSMEECEALCTRLAIMVNGQLKCLGSPQHLKNKFGSGYTLLAKTSRGAEELMA----FKDFVET 1649

  Fly  1388 TYPNAELKEKYEFSGRLTFQI-SKDTSWSEIFEYVEGNRSSWHLEDYSLSQPSLEDAF 1444
            .:|.:.|  |:|..|.:.:.| |::.||:::|..:|..:..:.||||.:||.|||..|
 Frog  1650 IFPGSVL--KHEHQGMVHYHITSQELSWAQVFGTLEKAKEKFDLEDYCVSQISLEQVF 1705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 120/310 (39%)
ABC_subfamily_A 339..556 CDD:213230 94/220 (43%)
ABC2_membrane_3 <821..1018 CDD:289468 66/235 (28%)
CcmA 1135..1450 CDD:224054 121/314 (39%)
ABC_subfamily_A 1136..1354 CDD:213230 92/220 (42%)
abca3XP_004918068.1 ABC2_membrane_3 <279..485 CDD:289468 54/206 (26%)
CcmA 547..830 CDD:224054 111/282 (39%)
ABC_subfamily_A 547..768 CDD:213230 94/220 (43%)
ABC2_membrane_3 939..1287 CDD:289468 95/375 (25%)
NatA 1399..1625 CDD:226927 95/225 (42%)
ABC_subfamily_A 1399..1620 CDD:213230 92/220 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X215
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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