DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and abca1b

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:XP_005173137.1 Gene:abca1b / 100136868 ZFINID:ZDB-GENE-030131-9826 Length:2282 Species:Danio rerio


Alignment Length:1717 Identity:456/1717 - (26%)
Similarity:757/1717 - (44%) Gaps:389/1717 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 IKDLPSP----PIFKSDNSSTLQDVGIMIIVIIIFFVVVSLTKSIVEEKELQLKVTLNLMGVGSC 106
            |:.:|.|    .||....|.::.    :.:.:...:.|..:.|.:|.|||.:||.|:.:||:.:.
Zfish   622 IQQMPYPCYVDDIFLRIMSRSMP----LFMTLAWMYSVAIIIKGVVYEKEARLKETMRIMGLDNG 682

  Fly   107 LQWVAWYIQTFIIFLIGSSIITLFWKL--VLPNSE--ISFMPFTHWSMALFVLLVLSHCTICFSF 167
            :.|.:|:|.:.|..||.:.::.|..|:  :||.|:  :.|:     .:..|.::.:..|     |
Zfish   683 ILWFSWFISSLIPLLISAGLLVLLLKMGNLLPYSDPGVVFL-----FLGSFAVVTIMQC-----F 737

  Fly   168 LMSSLISTTYRISLVTFLALIATYLPFLILHSKGCSEGLNVFLSLFLLSGLQVLVVG-----ICM 227
            |:|:..:.....:....:.....|||:::..:.....|   |.:..:.|.|..:..|     ..:
Zfish   738 LISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYVG---FAAKVIASLLSPVAFGFGCEYFAL 799

  Fly   228 WEDYGEGLQWGNLFETSWPGGTLSVGYILLVMILASFLSLLLCLYLEKIRPGPYGVPQPWHFPCT 292
            :|:.|.|:||.|||.:.......::...|::|...:||..::..|:|.:.||.||:|:||:||.|
Zfish   800 FEEQGVGIQWNNLFSSPVEEDDYNLTTCLILMYFDAFLYGVMTWYIETVFPGQYGIPRPWYFPFT 864

  Fly   293 RCC-----STESLLPYSRLFNRIFGIYSAAPDEERPDLQLIEPDPVDKIAGVQIRGLSKTF--GK 350
            :..     ||.:...:.:..|              .....||.:|.....||.|..|.|.:  ||
Zfish   865 KSYWFGENSTNNTAIHGKKSN--------------AGAVCIEEEPTHLKLGVYIENLVKVYRHGK 915

  Fly   351 MEVVKNVSFDMFEGQITVLMGHNGAGKTTLISMLAGFISPTSGTALINGFDIRQERRQAQRCIGL 415
            ...|..::....|||||..:|||||||||.:|:|.|...||||||.|.|.|||.|....::.:|:
Zfish   916 KLAVDGLTLGFHEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIMGKDIRSELSSIRQSLGV 980

  Fly   416 CPQQNVLFKHLSSVSHIQLFSRLRGLRGAEVKSEVQNYLKKLNLQEKKRLAARNLSGGTQRRLSV 480
            |||.||||..|:...||..::||:||...|||:|::..|....|..|::.....||||.||:|||
Zfish   981 CPQHNVLFSMLTVEEHIWFYARLKGLSEEEVKAEMEQILSDTGLPHKRKSRTSQLSGGMQRKLSV 1045

  Fly   481 ACSLCGGVKVLICDEPSTGLDPSARRELWRLILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQ 545
            |.:..||.||:|.|||:.|:||.|||.:|.|:|:.:.|.||||:||.:|:.::||||:.|||.|:
Zfish  1046 ALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRAGRTILLSTHHMDEADILGDRIAIISHGK 1110

  Fly   546 LRCIGSLPFLKKQVDASCLITCEAR------KRC------------------------------- 573
            |.|:||..|||.|:.....:|...:      ..|                               
Zfish  1111 LCCVGSSLFLKTQLGTGYYLTLVKKNTEPSLSSCRNSSSTVSFVKKDDNASESSSDAGLGSDQES 1175

  Fly   574 ------------------DLEKLTSLISRHVGTIQPFSIKGRDVCYKLPLSKSK--YFSSLFRDL 618
                              |:..::.||.:||...:....:|.::.|.||...:|  .|..||.||
Zfish  1176 EAATAIGTSWPESPVVPVDVTIISRLILKHVPAARMVEDQGHEITYVLPYESAKNGAFVELFHDL 1240

  Fly   619 ESQMNILGVRGFSLSSVSLEEIFMSFGAED----------------LNSRQSGGAEKR------- 660
            :.::..||:..:.:|..:|||||:.. |||                ...|.:.||:.:       
Zfish  1241 DDRLADLGISSYGVSDTTLEEIFLKV-AEDSGVDTEMLSDGTLPVRRQRRHAFGADHQSCLKPLT 1304

  Fly   661 DDDDRD------DDEENEV-----QDGNVRSCKKQWR-------AMMTKKVMALYDNKVYFLLLL 707
            :||..|      |.|..|.     .||......|.|.       |::.|:::....::..|...:
Zfish  1305 EDDSFDCNESEGDPESKETDYLSGSDGKGSYQVKGWSLKRQQFVALLWKRLLYARRSRKGFFAQI 1369

  Fly   708 LTPIVYYITTLM-------------MATKP--------------------HHSGRPTFNISDYGV 739
            :.|.|:....|:             :|..|                    |...|..|:...:|.
Zfish  1370 VLPAVFVCIALVFSLIVPPFGKYPSLALNPWMYEEQFMFFSEDAPYDVSTHKLLRALFDDPGFGT 1434

  Fly   740 -----------------DKFTI------LLSVPVSKSYTEERRADSIASLIKGKLKL-------- 773
                             ::::.      ::.:..::::|....:.:......||.|:        
Zfish  1435 RCMKGESIPDAPCTMGDEEWSTPEVPESIIEILTTRNWTMNDPSPACECSCNGKKKMLPECPAGA 1499

  Fly   774 -------IVVSE----------QIKDYVDDKW-----KSREGRREIN------------------ 798
                   |.:||          .|.||:...:     ||.:.:..:|                  
Zfish  1500 GGLPPPQIKISETETLQNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARSTQVLP 1564

  Fly   799 --------------FVSMAIDTG---DR---------TGL------------IGWVGPRHYVHAA 825
                          ...:..|:|   ||         .||            .||       |:.
Zfish  1565 PAEEIDDAISRVREIFQLGKDSGSAADRFLKSLSAFINGLDTKNNVKIWFNNKGW-------HSI 1622

  Fly   826 PMILNLVYNALAQELIGP-----KISIEVTSVPFTLRKKE-----------DFLISNNGDIPIYV 874
            ...||::.|.:.:..:.|     :..|...:.|..|.|::           |.|:|   ...|:.
Zfish  1623 GAFLNVMNNGILRANLPPGKDPSEFGITAYNHPLNLTKEQLSQVALMTTSVDVLVS---ICVIFA 1684

  Fly   875 IGYVSIAMIIFSSAVIQERVSHMKMLQEVSGLEMITYWLSHLAFDMVVFFILVLALLLPLYGYAP 939
            :.:|..:.::|   :|||||:..|.:|.:||::...|||::..:||..:.:             |
Zfish  1685 MSFVPASFVVF---LIQERVNKAKHMQFISGVQPYLYWLANFLWDMCNYVV-------------P 1733

  Fly   940 WYLLLCVLFFTGLAGLIFIYF-LISMLSATFLAVSMILLSVIIGSLILMILGALALIFKMVYVAI 1003
            ..|::          |||:.| ..:.:|||.|.| :.||.::.|..|..::...:.:||:...|.
Zfish  1734 ATLVI----------LIFVCFQQKAYVSATNLPV-LALLLLLYGWSITPLMYPASFLFKIPSTAY 1787

  Fly  1004 YVANMHPLIAGYNCIQKCFHYMSLCGSYISEAQNPLSEN-LTSDEMYCI----------NPLA-- 1055
            .|.....::.|.|.....| .|.|.|::.....|.:.:| |.....:|:          ..:|  
Zfish  1788 VVLTSVNILIGINGSISTF-VMELFGNHEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADA 1851

  Fly  1056 ---FLEPRCVCVNPMTW----PDMLVMLGTAIILFLLIMFFEYGSCVWYRCKGCCPYSSKGSIED 1113
               |.|.|  ..:|:.|    .::..|....::.|::.:..:|.  .::..|..||..|....||
Zfish  1852 LERFGENR--FRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYR--FFFEPKSLCPKLSPIGEED 1912

  Fly  1114 PKVSREAEKIR--AMDADQIGTRALVVNGVSKKYGCDQL-AVNNISFALKPSHCVGLLGPNGAGK 1175
            ..|:||.::|.  |...|.:..|.|     :|.|...|. ||:.:...:.|..|.||||.|||||
Zfish  1913 EDVARERQRIMSGAGQGDILELRQL-----TKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGK 1972

  Fly  1176 TTTFKMIVGEHSIDKGNIYISGYSMRMKRNKAMKELGYCPQSDSFFEFLTGRQLLKVFLLIWGFP 1240
            |:||||:.|:..:.||..:|:|.|:..:.::..:.:|||||.|:..:.||||:.|:.:.::.|.|
Zfish  1973 TSTFKMLTGDSVVTKGEAFIAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVP 2037

  Fly  1241 SKDLNKRCEKLADQFGFRKHLDKKITYYSGGTKRKINAAVA-CGANSLICLDEPSAGVDPASRRH 1304
            ..::....|....:.|..|::||....||||..||::.|:: .||..::.||||:.|:||.:||.
Zfish  2038 ENEVCAVAEWGIRKLGLVKYVDKNAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTGMDPKARRA 2102

  Fly  1305 VWTIINEVAQQGKAVLLTSHNMDEINALCSKSVILVDGSIYAMGSVQHVKNKIAKGMTLKL-VVN 1368
            :|..|:.|.::|::|:||||:|:|..|||::..|:|:|....:|||||:||:...|.|:.| |..
Zfish  2103 LWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAG 2167

  Fly  1369 VQPDNMVAMLTKIEDDIYMTYPNAELKEKYEFSGRLTFQI-SKDTSWSEIFEYVEGNRSSWHLED 1432
            ..|| :..::..||.::    |.:.||||:.  ..|.:|: |..||.:.||..:..|:....:||
Zfish  2168 PDPD-LQPVMKFIESEL----PGSTLKEKHR--NMLQYQLPSSLTSLAHIFSILAKNKEFLRIED 2225

  Fly  1433 YSLSQPSLEDAFEEIAEERRKKKSNQS 1459
            ||:||.:|:..|...|:::....|:.|
Zfish  2226 YSVSQTTLDQVFVNFAKDQSDDHSDSS 2252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 135/365 (37%)
ABC_subfamily_A 339..556 CDD:213230 106/218 (49%)
ABC2_membrane_3 <821..1018 CDD:289468 50/213 (23%)
CcmA 1135..1450 CDD:224054 118/318 (37%)
ABC_subfamily_A 1136..1354 CDD:213230 86/219 (39%)
abca1bXP_005173137.1 rim_protein 1..2242 CDD:130324 453/1705 (27%)
ABC_subfamily_A 902..1121 CDD:213230 106/218 (49%)
ABC_subfamily_A 1932..2152 CDD:213230 87/224 (39%)
DUF4162 2146..2238 CDD:290451 35/98 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53524
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.730

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