DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and abca1b

DIOPT Version :10

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:XP_005173137.1 Gene:abca1b / 100136868 ZFINID:ZDB-GENE-030131-9826 Length:2282 Species:Danio rerio


Alignment Length:1717 Identity:456/1717 - (26%)
Similarity:757/1717 - (44%) Gaps:389/1717 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 IKDLPSP----PIFKSDNSSTLQDVGIMIIVIIIFFVVVSLTKSIVEEKELQLKVTLNLMGVGSC 106
            |:.:|.|    .||....|.::.    :.:.:...:.|..:.|.:|.|||.:||.|:.:||:.:.
Zfish   622 IQQMPYPCYVDDIFLRIMSRSMP----LFMTLAWMYSVAIIIKGVVYEKEARLKETMRIMGLDNG 682

  Fly   107 LQWVAWYIQTFIIFLIGSSIITLFWKL--VLPNSE--ISFMPFTHWSMALFVLLVLSHCTICFSF 167
            :.|.:|:|.:.|..||.:.::.|..|:  :||.|:  :.|:     .:..|.::.:..|     |
Zfish   683 ILWFSWFISSLIPLLISAGLLVLLLKMGNLLPYSDPGVVFL-----FLGSFAVVTIMQC-----F 737

  Fly   168 LMSSLISTTYRISLVTFLALIATYLPFLILHSKGCSEGLNVFLSLFLLSGLQVLVVG-----ICM 227
            |:|:..:.....:....:.....|||:::..:.....|   |.:..:.|.|..:..|     ..:
Zfish   738 LISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYVG---FAAKVIASLLSPVAFGFGCEYFAL 799

  Fly   228 WEDYGEGLQWGNLFETSWPGGTLSVGYILLVMILASFLSLLLCLYLEKIRPGPYGVPQPWHFPCT 292
            :|:.|.|:||.|||.:.......::...|::|...:||..::..|:|.:.||.||:|:||:||.|
Zfish   800 FEEQGVGIQWNNLFSSPVEEDDYNLTTCLILMYFDAFLYGVMTWYIETVFPGQYGIPRPWYFPFT 864

  Fly   293 RCC-----STESLLPYSRLFNRIFGIYSAAPDEERPDLQLIEPDPVDKIAGVQIRGLSKTF--GK 350
            :..     ||.:...:.:..|              .....||.:|.....||.|..|.|.:  ||
Zfish   865 KSYWFGENSTNNTAIHGKKSN--------------AGAVCIEEEPTHLKLGVYIENLVKVYRHGK 915

  Fly   351 MEVVKNVSFDMFEGQITVLMGHNGAGKTTLISMLAGFISPTSGTALINGFDIRQERRQAQRCIGL 415
            ...|..::....|||||..:|||||||||.:|:|.|...||||||.|.|.|||.|....::.:|:
Zfish   916 KLAVDGLTLGFHEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIMGKDIRSELSSIRQSLGV 980

  Fly   416 CPQQNVLFKHLSSVSHIQLFSRLRGLRGAEVKSEVQNYLKKLNLQEKKRLAARNLSGGTQRRLSV 480
            |||.||||..|:...||..::||:||...|||:|::..|....|..|::.....||||.||:|||
Zfish   981 CPQHNVLFSMLTVEEHIWFYARLKGLSEEEVKAEMEQILSDTGLPHKRKSRTSQLSGGMQRKLSV 1045

  Fly   481 ACSLCGGVKVLICDEPSTGLDPSARRELWRLILEAKEGCTILLTTHQLDDGEVLGDRVVIISDGQ 545
            |.:..||.||:|.|||:.|:||.|||.:|.|:|:.:.|.||||:||.:|:.::||||:.|||.|:
Zfish  1046 ALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRAGRTILLSTHHMDEADILGDRIAIISHGK 1110

  Fly   546 LRCIGSLPFLKKQVDASCLITCEAR------KRC------------------------------- 573
            |.|:||..|||.|:.....:|...:      ..|                               
Zfish  1111 LCCVGSSLFLKTQLGTGYYLTLVKKNTEPSLSSCRNSSSTVSFVKKDDNASESSSDAGLGSDQES 1175

  Fly   574 ------------------DLEKLTSLISRHVGTIQPFSIKGRDVCYKLPLSKSK--YFSSLFRDL 618
                              |:..::.||.:||...:....:|.::.|.||...:|  .|..||.||
Zfish  1176 EAATAIGTSWPESPVVPVDVTIISRLILKHVPAARMVEDQGHEITYVLPYESAKNGAFVELFHDL 1240

  Fly   619 ESQMNILGVRGFSLSSVSLEEIFMSFGAED----------------LNSRQSGGAEKR------- 660
            :.::..||:..:.:|..:|||||:.. |||                ...|.:.||:.:       
Zfish  1241 DDRLADLGISSYGVSDTTLEEIFLKV-AEDSGVDTEMLSDGTLPVRRQRRHAFGADHQSCLKPLT 1304

  Fly   661 DDDDRD------DDEENEV-----QDGNVRSCKKQWR-------AMMTKKVMALYDNKVYFLLLL 707
            :||..|      |.|..|.     .||......|.|.       |::.|:::....::..|...:
Zfish  1305 EDDSFDCNESEGDPESKETDYLSGSDGKGSYQVKGWSLKRQQFVALLWKRLLYARRSRKGFFAQI 1369

  Fly   708 LTPIVYYITTLM-------------MATKP--------------------HHSGRPTFNISDYGV 739
            :.|.|:....|:             :|..|                    |...|..|:...:|.
Zfish  1370 VLPAVFVCIALVFSLIVPPFGKYPSLALNPWMYEEQFMFFSEDAPYDVSTHKLLRALFDDPGFGT 1434

  Fly   740 -----------------DKFTI------LLSVPVSKSYTEERRADSIASLIKGKLKL-------- 773
                             ::::.      ::.:..::::|....:.:......||.|:        
Zfish  1435 RCMKGESIPDAPCTMGDEEWSTPEVPESIIEILTTRNWTMNDPSPACECSCNGKKKMLPECPAGA 1499

  Fly   774 -------IVVSE----------QIKDYVDDKW-----KSREGRREIN------------------ 798
                   |.:||          .|.||:...:     ||.:.:..:|                  
Zfish  1500 GGLPPPQIKISETETLQNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARSTQVLP 1564

  Fly   799 --------------FVSMAIDTG---DR---------TGL------------IGWVGPRHYVHAA 825
                          ...:..|:|   ||         .||            .||       |:.
Zfish  1565 PAEEIDDAISRVREIFQLGKDSGSAADRFLKSLSAFINGLDTKNNVKIWFNNKGW-------HSI 1622

  Fly   826 PMILNLVYNALAQELIGP-----KISIEVTSVPFTLRKKE-----------DFLISNNGDIPIYV 874
            ...||::.|.:.:..:.|     :..|...:.|..|.|::           |.|:|   ...|:.
Zfish  1623 GAFLNVMNNGILRANLPPGKDPSEFGITAYNHPLNLTKEQLSQVALMTTSVDVLVS---ICVIFA 1684

  Fly   875 IGYVSIAMIIFSSAVIQERVSHMKMLQEVSGLEMITYWLSHLAFDMVVFFILVLALLLPLYGYAP 939
            :.:|..:.::|   :|||||:..|.:|.:||::...|||::..:||..:.:             |
Zfish  1685 MSFVPASFVVF---LIQERVNKAKHMQFISGVQPYLYWLANFLWDMCNYVV-------------P 1733

  Fly   940 WYLLLCVLFFTGLAGLIFIYF-LISMLSATFLAVSMILLSVIIGSLILMILGALALIFKMVYVAI 1003
            ..|::          |||:.| ..:.:|||.|.| :.||.::.|..|..::...:.:||:...|.
Zfish  1734 ATLVI----------LIFVCFQQKAYVSATNLPV-LALLLLLYGWSITPLMYPASFLFKIPSTAY 1787

  Fly  1004 YVANMHPLIAGYNCIQKCFHYMSLCGSYISEAQNPLSEN-LTSDEMYCI----------NPLA-- 1055
            .|.....::.|.|.....| .|.|.|::.....|.:.:| |.....:|:          ..:|  
Zfish  1788 VVLTSVNILIGINGSISTF-VMELFGNHEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADA 1851

  Fly  1056 ---FLEPRCVCVNPMTW----PDMLVMLGTAIILFLLIMFFEYGSCVWYRCKGCCPYSSKGSIED 1113
               |.|.|  ..:|:.|    .::..|....::.|::.:..:|.  .::..|..||..|....||
Zfish  1852 LERFGENR--FRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYR--FFFEPKSLCPKLSPIGEED 1912

  Fly  1114 PKVSREAEKIR--AMDADQIGTRALVVNGVSKKYGCDQL-AVNNISFALKPSHCVGLLGPNGAGK 1175
            ..|:||.::|.  |...|.:..|.|     :|.|...|. ||:.:...:.|..|.||||.|||||
Zfish  1913 EDVARERQRIMSGAGQGDILELRQL-----TKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGK 1972

  Fly  1176 TTTFKMIVGEHSIDKGNIYISGYSMRMKRNKAMKELGYCPQSDSFFEFLTGRQLLKVFLLIWGFP 1240
            |:||||:.|:..:.||..:|:|.|:..:.::..:.:|||||.|:..:.||||:.|:.:.::.|.|
Zfish  1973 TSTFKMLTGDSVVTKGEAFIAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVP 2037

  Fly  1241 SKDLNKRCEKLADQFGFRKHLDKKITYYSGGTKRKINAAVA-CGANSLICLDEPSAGVDPASRRH 1304
            ..::....|....:.|..|::||....||||..||::.|:: .||..::.||||:.|:||.:||.
Zfish  2038 ENEVCAVAEWGIRKLGLVKYVDKNAGSYSGGNMRKLSTAISLIGAPPVVFLDEPTTGMDPKARRA 2102

  Fly  1305 VWTIINEVAQQGKAVLLTSHNMDEINALCSKSVILVDGSIYAMGSVQHVKNKIAKGMTLKL-VVN 1368
            :|..|:.|.::|::|:||||:|:|..|||::..|:|:|....:|||||:||:...|.|:.| |..
Zfish  2103 LWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAG 2167

  Fly  1369 VQPDNMVAMLTKIEDDIYMTYPNAELKEKYEFSGRLTFQI-SKDTSWSEIFEYVEGNRSSWHLED 1432
            ..|| :..::..||.::    |.:.||||:.  ..|.:|: |..||.:.||..:..|:....:||
Zfish  2168 PDPD-LQPVMKFIESEL----PGSTLKEKHR--NMLQYQLPSSLTSLAHIFSILAKNKEFLRIED 2225

  Fly  1433 YSLSQPSLEDAFEEIAEERRKKKSNQS 1459
            ||:||.:|:..|...|:::....|:.|
Zfish  2226 YSVSQTTLDQVFVNFAKDQSDDHSDSS 2252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 rim_protein <81..1451 CDD:130324 447/1668 (27%)
abca1bXP_005173137.1 rim_protein 1..2242 CDD:130324 453/1705 (27%)

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