DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42816 and abcg8

DIOPT Version :9

Sequence 1:NP_730301.3 Gene:CG42816 / 39977 FlyBaseID:FBgn0261998 Length:1459 Species:Drosophila melanogaster
Sequence 2:NP_001108041.2 Gene:abcg8 / 100136850 ZFINID:ZDB-GENE-050517-41 Length:684 Species:Danio rerio


Alignment Length:748 Identity:149/748 - (19%)
Similarity:271/748 - (36%) Gaps:234/748 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   350 KMEVVKNVSFDMFEGQITVLMGHNGAGKTTLISML-----AGFISPTSGTALINGFDIRQERRQA 409
            |..|:|:::..:..||:..::|.:|.|||:|:.::     .|  |..||..||||..  ..|...
Zfish    90 KQTVIKDLNLHVHSGQMLAVIGSSGCGKTSLLDIITCRDEGG--SMNSGEILINGKP--STRSLV 150

  Fly   410 QRCIGLCPQQNVLFKHLSSVSHIQLFSRLR---GLRGAEVKSEVQNYLKKLNLQE--KKRLA--- 466
            ::.|....|.:.|..||:....:...::||   .....:....|.:.:.:|.|::  ..|:.   
Zfish   151 KKSIAHVRQDDRLLPHLTVRETLAFVAKLRLPANFSQKQRDQRVDDVIAELRLRQCAHTRVGNEY 215

  Fly   467 ARNLSGGTQRRLSVACSLCGGVKVLICDEPSTGLDPSARRE----LWRLILEAKEGCTILLTTHQ 527
            .|.:|||.:||:|:|..|.....:||.|||::|||......    |:||   |:....:||:.||
Zfish   216 VRGVSGGERRRVSIAVQLLWNPGILILDEPTSGLDSFTAHNLVITLYRL---ARGNRLVLLSVHQ 277

  Fly   528 -LDDGEVLGDRVVIISDGQLRCIGSLPFLKKQVDASCLI-----------------------TCE 568
             ..|...|.|.||::|.|.....|.   .|..|.....:                       |.|
Zfish   278 PRSDIFQLFDLVVLLSSGSAVYCGQ---AKDMVSYFTTLGYPCPRYCNPSDYYVDLISIDRRTPE 339

  Fly   569 ARKRCDLEKLTSLISRHVGTI---QPFSIKGRDVC----YKLPLSKSKYFSSLFRDLESQMNILG 626
            ...:| |||.:.|.::.:..:   :.|..|. :||    .:.|.|                    
Zfish   340 KEAQC-LEKASMLAAQFLEKVKNNEDFMWKS-EVCGPPALEAPQS-------------------- 382

  Fly   627 VRGFSLSSVSLEEIFMSFGAEDLNSRQSGGAEKRDDDDRDDDEENEVQDGNVRSCKKQWRAMMTK 691
                |:.|||::|..::.                       .::.:...|.|.    |:..::.:
Zfish   383 ----SVPSVSMKESVITV-----------------------SKQKDQLPGKVH----QFTTLIRR 416

  Fly   692 KVMALYDNKVYFLLLLLTPIVYYITTLMMATKPHHSGRPTFNISDYGVD---------------K 741
            :|...|.:       |:|.:|:.:..|:|:..   .|...|..::.|:.               .
Zfish   417 QVFNDYRD-------LVTLVVHGLEALLMSLL---IGFLYFGCTEEGLSIQDTVALLYMIGALTP 471

  Fly   742 FTILLSVPVSKSYTEERRADSIASLIKGKLKLIVVSEQIKDYVDDKWKSREGRREINFVSMAIDT 806
            |.::|.| ::|.::|  ||              ::..:::|          |...:.....|...
Zfish   472 FAVVLDV-IAKCHSE--RA--------------MLYHELED----------GMYSVTPYFFAKVL 509

  Fly   807 GDRTGLIGWVGPRHYVHAAPMILNLVYNALAQELIGPKISIEVTSVPFTLRKKEDFLISNNGDIP 871
            |:.        |.|      ....|||......|.|    :.|....|.|    :||:       
Zfish   510 GEL--------PEH------CAFTLVYGVPIYWLAG----LNVAPDRFLL----NFLL------- 545

  Fly   872 IYVIGYVSIAMIIFSSAVIQERVSHMKMLQEVSGLEMITYWLSHLAFDMVVFFILVLALLLPLYG 936
            :::..|.|.:|.:|.:|.       :..||..|.:....:.:.:|....|:       .|..::.
Zfish   546 VWLTVYCSRSMALFVAAA-------LPTLQTSSFMGNALFTVFYLTAGFVI-------SLENMWM 596

  Fly   937 YAPWYLLLCVLFFTGLAGLIFIYFLISMLSATFLAVSMILLSVIIGSLILMILGALALIFKMV-Y 1000
            .|.|:..:..:.: |..|::.:.|.                    |:.|.:.:|.|.:.|..: .
Zfish   597 VASWFSYISFMRW-GFEGMLQVQFR--------------------GTRIPITIGNLTVEFDGIKV 640

  Fly  1001 VAIYVANMHPLIAGY------NCIQKCFHYMSL 1027
            |.:...|.:||.:.|      :.:....:|:||
Zfish   641 VEMMKMNQYPLFSCYLVLIAVSLVFILLYYLSL 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42816NP_730301.3 CcmA 336..643 CDD:224054 84/340 (25%)
ABC_subfamily_A 339..556 CDD:213230 64/223 (29%)
ABC2_membrane_3 <821..1018 CDD:289468 36/203 (18%)
CcmA 1135..1450 CDD:224054
ABC_subfamily_A 1136..1354 CDD:213230
abcg8NP_001108041.2 3a01204 47..674 CDD:273361 149/748 (20%)
ABCG_White 72..301 CDD:213201 63/217 (29%)
ABC2_membrane 413..617 CDD:279410 48/284 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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