DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6034 and kdm1a

DIOPT Version :9

Sequence 1:NP_649005.1 Gene:CG6034 / 39974 FlyBaseID:FBgn0036750 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001229924.1 Gene:kdm1a / 558450 ZFINID:ZDB-GENE-030131-7828 Length:833 Species:Danio rerio


Alignment Length:627 Identity:150/627 - (23%)
Similarity:243/627 - (38%) Gaps:228/627 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 TKETAKIVIIGAGASGVAAATKLLEQGFKNVLLFEAEDRIGGRINTILFANSLIDLGAQWCHGEE 77
            ||:|.|:::||||.||:|||.:|...|. :|.:.|:.||:|||:.|....|.:.||||....|..
Zfish   249 TKKTGKVIVIGAGVSGLAAARQLQSFGM-DVTVLESRDRVGGRVATFRKGNYVADLGAMVVTGLG 312

  Fly    78 GN---VVYEKV----------------------------KDLD---------VLDRTGDYVVHFI 102
            ||   ||.::|                            |:.|         :|:.| .|:.|.:
Zfish   313 GNPMAVVSKQVNMELAKIKQKCPLYEANGQAGERCTSVPKEKDEMVEQEFNRLLEAT-SYLSHQL 376

  Fly   103 RSNKEILTDVHNKALTELTNAFEVPGE-HEGSVGDAFNAYWKENIHQLVPNDKTIAKEAQDCLKK 166
            ..|     .::||.:: |..|.||..: .|..|.|....:||:.:       || .:|.:|.|.|
Zfish   377 DFN-----FLNNKPVS-LGQALEVVIQLQEKHVKDEQIEHWKKIV-------KT-QEELKDLLNK 427

  Fly   167 VICSMDACDNLSELSYRN----------FRNFAIAGGDQNLSWRQKGYWKFLSVLLNSSD----- 216
            ::.:.:....|.: .|:.          ...|.:....::|:...|.|.:.:.:.:...:     
Zfish   428 MVTTKEKVKELHQ-QYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELVEMQVKLEERLQEL 491

  Fly   217 --NQPGDQGILKGHVHLNKRIAKI----------------------NWEGDGE-------LTLRC 250
              |.|.|       |:|:.|..:|                      :|:.|.:       ||:| 
Zfish   492 EANPPSD-------VYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVR- 548

  Fly   251 WNG-----------------------QFVSA--------------------DHVICTVSLGVLRE 272
             ||                       ::.|:                    |.|:||:.|||:::
Zfish   549 -NGYSCVPVALAEGLDIKLNTAVRQVRYTSSGCEVIAVNTRSTTQTFIYKCDAVLCTLPLGVMKQ 612

  Fly   273 KHHKL-FVPALPASKIRSIEGLKLGTVNKFYLEFEEQPVPENIREMAFLWLEEDLKELRSGKYFW 336
            :...: |||.||..|..:|:.:..|.:||..|.|:                          :.||
Zfish   613 QPPAVQFVPPLPEWKTAAIQRMGFGNLNKVVLCFD--------------------------RVFW 651

  Fly   337 LESVCYFHRVDC---------------QPRLLQGWIIGAHSRYVETISEE-------QVLEGIMW 379
            ..||..|..|..               :..:|...:.|..:..:|.||::       .:|:||  
Zfish   652 DPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALMAGEAAGIMENISDDVIVGRCLAILKGI-- 714

  Fly   380 MFRKFLKFSVPYPKNFLRSQWQSNPNFRGSYSY---------YSTYADELRTGRTDLASPLVDVT 435
                |...:||.||..:.|:|:::|..||||||         |...|..:..|      |.:...
Zfish   715 ----FGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPG------PAIPGA 769

  Fly   436 GR--PRIQFAGEASSRNHFSTVHGAIESGWREAERLNEFYEG 475
            .:  ||:.||||.:.||:.:|||||:.||.|||.|:.:.:.|
Zfish   770 SQPVPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLG 811

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6034NP_649005.1 Amino_oxidase 33..470 CDD:279874 136/600 (23%)
NAD_binding_8 <35..88 CDD:290186 22/83 (27%)
kdm1aNP_001229924.1 SWIRM 151..238 CDD:282311
NAD_binding_8 257..315 CDD:290186 26/58 (45%)
Amino_oxidase 262..805 CDD:279874 140/606 (23%)
SKA2 371..>441 CDD:302619 21/84 (25%)
Prefoldin 393..494 CDD:298833 19/109 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0685
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2622
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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