DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6034 and Kdm1b

DIOPT Version :10

Sequence 1:NP_649005.1 Gene:CG6034 / 39974 FlyBaseID:FBgn0036750 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001100813.1 Gene:Kdm1b / 306819 RGDID:1310701 Length:824 Species:Rattus norvegicus


Alignment Length:504 Identity:121/504 - (24%)
Similarity:212/504 - (42%) Gaps:118/504 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 IVIIGAGASGVAAATKLLEQGFKNVLLFEAEDRIGGRI-NTILFANSLIDLGAQ----------- 71
            ::::|||.:|:|||.:|...|.| |.:.||:||||||: :...|...::..|.|           
  Rat   389 VLVVGAGPAGLAAARQLHNFGMK-VTVLEAKDRIGGRVWDDKSFKGVVVGRGPQIVNGCINNPVA 452

  Fly    72 -WCH---------GEEGNVVYEKVKDLD-VLDRTGDYVVHFIRSNKEILTDVHNKALTELTNAFE 125
             .|.         ||..:::.|..:..| .:|:..|:  ||     ..|.||.::...:.|...:
  Rat   453 LMCEQLGIRMHKLGERCDLIQEGGRITDPTIDKRMDF--HF-----NALLDVVSEWRKDKTLLQD 510

  Fly   126 VP-GEHEGSVGDAFNAYWKENIHQLVPNDKTIAKEAQDCLKKVICSMD-AC-DNLSELSYRNFRN 187
            || ||   .:.:.:.|:.||:..|....:..:       |:..:.::: || .:|.::|.|::.:
  Rat   511 VPLGE---KIEEIYRAFVKESGIQFSELEGQV-------LQFHLSNLEYACGSSLHQVSARSWDH 565

  Fly   188 ---FAIAGGDQNLSWRQKGYWKFLSVLLNSSDNQPGDQGILKGHVHLNKRIAKINWEGDGELTLR 249
               ||...||..|  ...||...:..|....|            :.|...:..|::.|| |:.:.
  Rat   566 NEFFAQFAGDHTL--LTPGYSTIVEKLAEGLD------------IRLKSPVQSIDYTGD-EVQVT 615

  Fly   250 CWNGQFVSADHVICTVSLGVLREKHHKLFVPALPASKIRSIEGLKLGTVNKFYLEFEEQPVPENI 314
            ..:|...||..|:.||.|.:| ::....|.|.|...|:::|..|..|.:.|..|:|..:      
  Rat   616 TTDGVVHSAQKVLVTVPLAML-QRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYR------ 673

  Fly   315 REMAFLWLEEDLKELRSGKYFWLESV-------------------CYFHRVDCQPRLLQGWIIGA 360
                                ||...|                   ..|:.:..|..:|...|.|.
  Rat   674 --------------------FWDSKVQGADFFGHVPPSASQRGLFAVFYDMGPQQSVLMSVITGE 718

  Fly   361 HSRYVETISEEQVLEGIMWMFRK-FLKFSVPYPKNFLRSQWQSNPNFRGSYSYYSTYADELRTGR 424
            ....:.|:.::|||:..:.:.|: |.:..:|.|..:..::|.:.|..:.:||:..|:.    :|.
  Rat   719 AVASLRTMDDKQVLQQCLGVLRELFKEQEIPDPTKYFVTRWNTEPWIQMAYSFVKTFG----SGE 779

  Fly   425 T-DLASPLVDVTGRPRIQFAGEASSRNHFSTVHGAIESGWREAERLNEF 472
            . |:.:..:..|    :.|||||::|:...||.||..||.|||.::..|
  Rat   780 AYDIIAEEIQGT----VYFAGEATNRHFPQTVTGAYLSGVREASKIAAF 824

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6034NP_649005.1 Amino_oxidase 33..470 CDD:396255 113/486 (23%)
Kdm1bNP_001100813.1 zf-CW 138..191 CDD:462181
PLN02328 <306..821 CDD:215187 120/499 (24%)
Blue background indicates that the domain is not in the aligned region.

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