DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6034 and KDM1B

DIOPT Version :10

Sequence 1:NP_649005.1 Gene:CG6034 / 39974 FlyBaseID:FBgn0036750 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_001426046.1 Gene:KDM1B / 221656 HGNCID:21577 Length:832 Species:Homo sapiens


Alignment Length:525 Identity:135/525 - (25%)
Similarity:224/525 - (42%) Gaps:121/525 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSACSEPTTFSKTKETAKIVIIGAGASGVAAATKLLEQGFKNVLLFEAEDRIGGRI-NTILFANS 64
            :|..::.....|......::|||||.:|:|||.:|...|.| |.:.||:||||||: :...|...
Human   376 LSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIK-VTVLEAKDRIGGRVWDDKSFKGV 439

  Fly    65 LIDLGAQ------------WCH---------GEEGNVVYEKVKDLD-VLDRTGDYVVHFIRSNKE 107
            .:..|||            .|.         ||..:::.|..:..| .:|:..|:  ||     .
Human   440 TVGRGAQIVNGCINNPVALMCEQLGISMHKFGERCDLIQEGGRITDPTIDKRMDF--HF-----N 497

  Fly   108 ILTDVHNKALTELTNAFEVP-GEHEGSVGDAFNAYWKENIHQLVPNDKTIAKEAQDCLKKVICSM 171
            .|.||.::...:.|...:|| ||   .:.:.:.|:.||:..|....:..:       |:..:.::
Human   498 ALLDVVSEWRKDKTQLQDVPLGE---KIEEIYKAFIKESGIQFSELEGQV-------LQFHLSNL 552

  Fly   172 D-AC-DNLSELSYRNFRN---FAIAGGDQNLSWRQKGYWKFLSVLLNSSDNQPGDQGILKGHVHL 231
            : || .||.::|.|::.:   ||...||..|  ...||...:..|....|.|      ||     
Human   553 EYACGSNLHQVSARSWDHNEFFAQFAGDHTL--LTPGYSVIIEKLAEGLDIQ------LK----- 604

  Fly   232 NKRIAKINWEGDGELTLRCWNGQFVSADHVICTVSLGVLREKHHKLFVPALPASKIRSIEGLKLG 296
            :.::..|::.|| |:.:...:|...||..|:.||.|.:| :|....|.|.|...|:::|..|..|
Human   605 SPQVQCIDYSGD-EVQVTTTDGTGYSAQKVLVTVPLALL-QKGAIQFNPPLSEKKMKAINSLGAG 667

  Fly   297 TVNKFYLEFEEQPVPENIREMAFLWLEEDLKELRSGKYFWLESV-------------------CY 342
            .:.|..|:|..:                          ||...|                   ..
Human   668 IIEKIALQFPYR--------------------------FWDSKVQGADFFGHVPPSASKRGLFAV 706

  Fly   343 FHRVDCQPR--LLQGWIIGAHSRYVETISEEQVLEGIMWMFRK-FLKFSVPYPKNFLRSQWQSNP 404
            |:.:|.|.:  :|...|.|.....|.|:.::|||:..|...|: |.:..||.|..:..::|.::|
Human   707 FYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDP 771

  Fly   405 NFRGSYSYYSTYADELRTGRTDLASPLV--DVTGRPRIQFAGEASSRNHFSTVHGAIESGWREAE 467
            ..:.:||:       ::||.:..|..::  |:.|  .:.|||||::|:...||.||..||.|||.
Human   772 WIQMAYSF-------VKTGGSGEAYDIIAEDIQG--TVFFAGEATNRHFPQTVTGAYLSGVREAS 827

  Fly   468 RLNEF 472
            ::..|
Human   828 KIAAF 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6034NP_649005.1 Amino_oxidase 33..470 CDD:396255 123/489 (25%)
KDM1BNP_001426046.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..47
GLYR1-binding. /evidence=ECO:0000269|PubMed:23260659, ECO:0007744|PDB:4GUR, ECO:0007744|PDB:4GUS, ECO:0007744|PDB:4GUT, ECO:0007744|PDB:4GUU 282..301
Histone H3-binding. /evidence=ECO:0000269|PubMed:23260659, ECO:0000269|PubMed:23266887, ECO:0007744|PDB:4FWF, ECO:0007744|PDB:4GUR, ECO:0007744|PDB:4GUS 447..476 3/28 (11%)
Histone H3-binding. /evidence=ECO:0000269|PubMed:23260659, ECO:0000269|PubMed:23266887, ECO:0007744|PDB:4FWF, ECO:0007744|PDB:4GUR, ECO:0007744|PDB:4GUS 496..507 4/15 (27%)
Histone H3-binding. /evidence=ECO:0000269|PubMed:23260659, ECO:0000269|PubMed:23266887, ECO:0007744|PDB:4FWF, ECO:0007744|PDB:4GUR, ECO:0007744|PDB:4GUS 547..581 9/33 (27%)
GLYR1-binding. /evidence=ECO:0000269|PubMed:23260659, ECO:0007744|PDB:4GUR, ECO:0007744|PDB:4GUS, ECO:0007744|PDB:4GUT, ECO:0007744|PDB:4GUU 573..575 0/1 (0%)
GLYR1-binding. /evidence=ECO:0000269|PubMed:23260659, ECO:0007744|PDB:4GUR, ECO:0007744|PDB:4GUS, ECO:0007744|PDB:4GUT, ECO:0007744|PDB:4GUU 808..824 7/15 (47%)
Blue background indicates that the domain is not in the aligned region.

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