DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6034 and Kdm1b

DIOPT Version :9

Sequence 1:NP_649005.1 Gene:CG6034 / 39974 FlyBaseID:FBgn0036750 Length:479 Species:Drosophila melanogaster
Sequence 2:XP_006516976.1 Gene:Kdm1b / 218214 MGIID:2145261 Length:834 Species:Mus musculus


Alignment Length:505 Identity:123/505 - (24%)
Similarity:214/505 - (42%) Gaps:119/505 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 IVIIGAGASGVAAATKLLEQGFKNVLLFEAEDRIGGRI-NTILFANSLIDLGAQ----------- 71
            ::::|||.:|:|||.:|...|.| |.:.||:||||||: :...|...::..|.|           
Mouse   398 VLVVGAGPAGLAAARQLHNFGMK-VTVLEAKDRIGGRVWDDKSFKGVVVGRGPQIVNGCINNPVA 461

  Fly    72 -WCH---------GEEGNVVYEKVKDLD-VLDRTGDYVVHFIRSNKEILTDVHNKALTELTNAFE 125
             .|.         ||..:::.|..:..| .:|:..|:  ||     ..|.||.::...:.|...:
Mouse   462 LMCEQLGISMRKLGERCDLIQEGGRITDPTVDKRMDF--HF-----NALLDVVSEWRKDKTLLQD 519

  Fly   126 VP-GEHEGSVGDAFNAYWKENIHQLVPNDKTIAKEAQDCLKKVICSMD-AC-DNLSELSYRNFRN 187
            || ||   .:.:.:.|:.||:..|....:..:       |:..:.::: || .:|.::|.|::.:
Mouse   520 VPLGE---KIEEIYRAFVKESGIQFSELEGQV-------LQFHLSNLEYACGSSLHQVSARSWDH 574

  Fly   188 ---FAIAGGDQNLSWRQKGYWKFLSVLLNSSDNQPGDQGILKGHVHLNKRIAKINWEGDGELTLR 249
               ||...||..|  ...||...:..|....|            :.|...:..|::.|| |:.:.
Mouse   575 NEFFAQFAGDHTL--LTPGYSTIIEKLAEGLD------------IRLKSPVQSIDYTGD-EVQVT 624

  Fly   250 CWNGQFVSADHVICTVSLGVLREKHHKLFVPALPASKIRSIEGLKLGTVNKFYLEFEEQPVPENI 314
            ..:|...||..|:.||.|.:| ::....|.|.|...|:::|..|..|.:.|..|:|..:      
Mouse   625 TTDGMGHSAQKVLVTVPLAIL-QRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYR------ 682

  Fly   315 REMAFLWLEEDLKELRSGKYFWLESV-------------------CYFHRVDCQPR-LLQGWIIG 359
                                ||...|                   ..|:.:|.|.: :|...|.|
Mouse   683 --------------------FWDSKVQGADFFGHVPPSASQRGLFAVFYDMDSQQQSVLMSVITG 727

  Fly   360 AHSRYVETISEEQVLEGIMWMFRK-FLKFSVPYPKNFLRSQWQSNPNFRGSYSYYSTYADELRTG 423
            .....:.|:.::|||:..|.:.|: |.:..:|.|..:..::|.:.|..:.:||:..|:.    :|
Mouse   728 EAVASLRTMDDKQVLQQCMGILRELFKEQEIPEPTKYFVTRWSTEPWIQMAYSFVKTFG----SG 788

  Fly   424 RT-DLASPLVDVTGRPRIQFAGEASSRNHFSTVHGAIESGWREAERLNEF 472
            .. |:.:..:..|    :.|||||::|:...||.||..||.|||.::..|
Mouse   789 EAYDIIAEEIQGT----VFFAGEATNRHFPQTVTGAYLSGVREASKIAAF 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6034NP_649005.1 Amino_oxidase 33..470 CDD:279874 115/487 (24%)
NAD_binding_8 <35..88 CDD:290186 19/74 (26%)
Kdm1bXP_006516976.1 zf-CW 138..198 CDD:369393
PLN02328 <315..831 CDD:215187 122/500 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S6365
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.860

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