DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6034 and lsd-1

DIOPT Version :9

Sequence 1:NP_649005.1 Gene:CG6034 / 39974 FlyBaseID:FBgn0036750 Length:479 Species:Drosophila melanogaster
Sequence 2:NP_510000.2 Gene:lsd-1 / 181369 WormBaseID:WBGene00011615 Length:737 Species:Caenorhabditis elegans


Alignment Length:601 Identity:136/601 - (22%)
Similarity:235/601 - (39%) Gaps:198/601 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 FSKTK-----ETAKIVIIGAGASGVAAATKLLEQGFKNVLLFEAEDRIGGRINTILFANSLIDLG 69
            |.||:     |...:|:|||||:|:||||:||..|| :|.:.||....|||:.:::..       
 Worm   163 FPKTELVNNMEKKFVVVIGAGAAGIAAATQLLTFGF-DVAVVEASGLTGGRVRSLISK------- 219

  Fly    70 AQWCHGEEGNVVYEKVKDLDVLDRTGDYVVHFIRSNKEILTD---------------------VH 113
                |||......:.:::||  :.....::|.:..|:.|:::                     ::
 Worm   220 ----HGELIETGCDSLRNLD--ESVITTLLHQVPLNENIMSENTIVFSKGKYVPVARCHVINGLY 278

  Fly   114 NKALTELTNAFEVPGEHEGSVG------DAFNAYW------------------------KENIHQ 148
            ......|.:|...| |..|..|      .|:..|:                        ::::::
 Worm   279 ANLKAGLAHASHGP-EQRGENGLYISRQQAYENYFNMIERSTLLSYYNFAKEKVNLNAERKHLYE 342

  Fly   149 LV------------------PNDKTIAKEAQDCLKKVICSMD-AC-------DNLSELSYRNFR- 186
            ::                  |:|:.:.|..|..::|.|...| ||       :.:::|. :|.| 
 Worm   343 VLKTNRLTALLAEQKLKNTPPSDELLLKSLQIDIEKAIRQFDEACERFEICEERIADLE-KNPRC 406

  Fly   187 ------------NFAIAGGDQNLSWRQKGYWKF--------------------LSVLLNSSDNQP 219
                        || :.|.::.|...|....:|                    ..||:|.::.: 
 Worm   407 KQSMHPNDFIHYNF-LLGFEERLFGAQLEKVQFSCNVNELKLKSQVARVQEGLAQVLINVANER- 469

  Fly   220 GDQGILKGHVHLNKRIAKINWEGDGE---LTLRCWNGQ--FVSADHVICTVSLGVLR-----EKH 274
                  |..:|.|:|:.:|: .|..:   |.||..:|.  .::||:|:.|:.:|||:     ::.
 Worm   470 ------KVKIHHNQRVIEID-TGSSDAVILKLRKPDGSVGILNADYVVSTLPIGVLKKTIIGDER 527

  Fly   275 HKLFVPALPASKIRSIEGLKLGTVNKFYLEFEEQPVPENIREMAFLWLEEDLKELRSGKYFWLES 339
            ..:|.|.||.||..:|..|..|.:||....||.:..||:|.:.|.  :.:.:.| |:..:.|...
 Worm   528 APVFRPPLPKSKFAAIRSLGNGLINKIVFVFETRFWPESINQFAI--VPDKISE-RAAMFTWSSL 589

  Fly   340 VCYFHRVDCQPRLLQGWIIGAHSRYVETISEE---QVLEGIMWMFRKFLKFSVPYPKNFLRSQWQ 401
            .        :.|.|....:| .:|:.:|...|   :.||.:..:|:     ..|.|.:...:.| 
 Worm   590 P--------ESRTLTTHYVG-ENRFHDTPVTELITKALEMLKTVFK-----DCPSPIDAYVTNW- 639

  Fly   402 SNPNFRGSYSYYSTYADELRTG-------RTD------LASPLVDVTGRPRIQFAGEASSRNHFS 453
                          :.|||..|       ||:      |..||....|:||:.||||.:|.....
 Worm   640 --------------HTDELAFGTGTFMSLRTEPQHFDALKEPLKTRDGKPRVFFAGEHTSALEHG 690

  Fly   454 TVHGAIESGWREAERL 469
            |:.||..||.|.|..|
 Worm   691 TLDGAFNSGLRAAADL 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6034NP_649005.1 Amino_oxidase 33..470 CDD:279874 122/573 (21%)
NAD_binding_8 <35..88 CDD:290186 13/52 (25%)
lsd-1NP_510000.2 SWIRM 80..158 CDD:367940
Amino_oxidase 191..706 CDD:366721 121/571 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160161007
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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