DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ccn and Ccn4

DIOPT Version :10

Sequence 1:NP_730294.1 Gene:Ccn / 39972 FlyBaseID:FBgn0052183 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_113904.2 Gene:Ccn4 / 65154 RGDID:69431 Length:367 Species:Rattus norvegicus


Alignment Length:248 Identity:71/248 - (28%)
Similarity:102/248 - (41%) Gaps:66/248 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 CSVGNTTFAHGVTFKLDCKTQCVCENGRHACSTLCPNEQLPAPEDTISCRSPRLVEVPGHCCKMW 105
            |.:....:.:|.:|:.:|:..|.|.:|...|:.||.:.:.|    .:.||.||.|.|||.||:.|
  Rat   123 CVLDGVRYTNGESFQPNCRYNCTCIDGTVGCTPLCLSPRPP----RLWCRQPRHVRVPGQCCEQW 183

  Fly   106 LCEN------PTA--------------DVYATCHNSTTSGNWTACSRSCGLGTATRHTTTHAGCH 150
            :|::      .||              ..|..|...|:.  |:.||.:||||.:||.:..:|.|.
  Rat   184 VCDDDARRPRQTALLDTRAFAASGAVEQRYENCIAYTSP--WSPCSTTCGLGISTRISNVNARCW 246

  Fly   151 QLSNLRLCENRRCDKDDHEDNKWSRSRPLTHKRKQHRAHSHSHQRYHHHKEHEEPAHRIRKGHEC 215
            .....|||..|.||.|         .||                             .|:.|.:|
  Rat   247 PEQESRLCNLRPCDVD---------IRP-----------------------------HIKAGKKC 273

  Fly   216 RSIQRLGPA-RIRLGECVSRKLYRPKLCGRCHRGVKCCAPAVSTTIQVELLCP 267
            .::.:...| ...|..|||.:.|:||.||.|... :||.|..|.||.|:..||
  Rat   274 LAVYQPEEATNFTLASCVSTRTYQPKYCGVCTDN-RCCIPYKSKTISVDFQCP 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CcnNP_730294.1 VWC 41..104 CDD:450195 21/62 (34%)
TSP1_spondin 118..163 CDD:480609 17/44 (39%)
Ccn4NP_113904.2 IGFBP 49..101 CDD:459717
VWC 123..181 CDD:214564 20/61 (33%)
TSP1_CCN 216..259 CDD:465952 17/44 (39%)
Blue background indicates that the domain is not in the aligned region.

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