DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ccn and ccn4a

DIOPT Version :10

Sequence 1:NP_730294.1 Gene:Ccn / 39972 FlyBaseID:FBgn0052183 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001159702.1 Gene:ccn4a / 560713 ZFINID:ZDB-GENE-070705-178 Length:360 Species:Danio rerio


Alignment Length:246 Identity:71/246 - (28%)
Similarity:105/246 - (42%) Gaps:64/246 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 CSVGNTTFAHGVTFKLDCKTQCVCENGRHACSTLCPNEQLPAPEDTISCRSPRLVEVPGHCCKMW 105
            |......:.:|.:|:.:||.||:|.||...|..||...|.|    .:.|::|:.|:|.|.||::|
Zfish   120 CEHNGVIYRNGQSFQPNCKYQCLCVNGAIGCVPLCNESQPP----RVWCQNPQRVKVHGQCCELW 180

  Fly   106 LCE-----NPTA-------------DVYATCHNSTTSGNWTACSRSCGLGTATRHTTTHAGCHQL 152
            :|:     ..||             :.:..|...|||  |:.||::||.|.:.|.|..:..|..:
Zfish   181 ICDESRRGRKTAPRHTMAALSSVKKNWHKNCVAQTTS--WSPCSKTCGRGVSLRITNNNKKCEMV 243

  Fly   153 SNLRLCENRRCDKDDHEDNKWSRSRPLTHKRKQHRAHSHSHQRYHHHKEHEEPAHRIRKGHECRS 217
            :..|||..|.|:.|            :|                    :|      |:.|.:|.:
Zfish   244 NESRLCNIRPCNVD------------IT--------------------KH------IKPGKKCLN 270

  Fly   218 IQRL-GPARIRLGECVSRKLYRPKLCGRCHRGVKCCAPAVSTTIQVELLCP 267
            |.|. .|....:..|.|...||||.||.| ...:||.|..|.||:|:..||
Zfish   271 IYRAEKPQNFTISGCTSTNTYRPKYCGVC-TDERCCIPYKSKTIEVDFQCP 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CcnNP_730294.1 VWC 41..104 CDD:450195 22/62 (35%)
TSP1_spondin 118..163 CDD:480609 17/44 (39%)
ccn4aNP_001159702.1 IGFBP 46..98 CDD:459717
VWC 120..178 CDD:214564 21/61 (34%)
TSP1_CCN 211..254 CDD:465952 17/44 (39%)
GHB_like 275..341 CDD:473907 19/47 (40%)
Blue background indicates that the domain is not in the aligned region.

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