DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ccn and ccn1l2

DIOPT Version :10

Sequence 1:NP_730294.1 Gene:Ccn / 39972 FlyBaseID:FBgn0052183 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001074456.2 Gene:ccn1l2 / 553273 ZFINID:ZDB-GENE-060404-5 Length:373 Species:Danio rerio


Alignment Length:370 Identity:81/370 - (21%)
Similarity:114/370 - (30%) Gaps:161/370 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 HPNPANCSVGNTTFAHGVTFKLDCKTQCVCENGRHACSTLCPNEQLPAPEDTISCRSPRLVEVPG 99
            |..|  |......:.||..|:..|:.||.|.:|...|..|||   |..|.....|.:|||....|
Zfish   102 HGRP--CEFSGRVYQHGEDFQTGCEHQCSCIDGVVGCVPLCP---LLVPLPGSHCTNPRLETPTG 161

  Fly   100 HCCKMWLCEN------------------------------PTADVYAT------------CHNST 122
            |||:.|:|::                              |.|..:::            |.:.|
Zfish   162 HCCQRWVCDSDNSIREEEPLPKHTPQYNHISKLLQEHRSRPAAQEWSSAPVSEIPFPSPGCFSQT 226

  Fly   123 TSGNWTACSRSCGLGTATRHTTTHAGCHQLSNLRLCENRRCDKDDHEDNKWSRSRPLTHKRKQHR 187
            |  :|:.||.|||.|.::|.|.::|.|..:...|||:...||...|                   
Zfish   227 T--DWSECSASCGFGVSSRVTNSNAQCRLIRETRLCQITPCDATPH------------------- 270

  Fly   188 AHSHSHQRYHHHKEHEEPAHRIRKGHECRSIQR-LGPARIRLGECVSRKLYRPKLCGRCHRGVKC 251
                                 ::||.:||...| ..|..|....|.:.:.|||:.||.|... :|
Zfish   271 ---------------------LKKGKKCRRTTRPRKPELITFAGCSTVRRYRPRSCGSCVDD-RC 313

  Fly   252 CAPAVSTTIQVELLCPLNAVDPINYVQRRQANKKRQMKEPQDDEDDDDDDDGDDNVEPEPVLQSA 316
            |.|..:.|:::...||                                  ||             
Zfish   314 CQPRSTRTVRMRFRCP----------------------------------DG------------- 331

  Fly   317 QLWDTVALEPIDQEFLQSHQIQIENKFIAVEWILKCECSTKNCNA 361
                                   ||...:|.||..|.||...|.|
Zfish   332 -----------------------ENITRSVMWIQTCRCSKSFCRA 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CcnNP_730294.1 VWC 41..104 CDD:450195 23/62 (37%)
TSP1_spondin 118..163 CDD:480609 17/44 (39%)
ccn1l2NP_001074456.2 IGFBP <52..84 CDD:459717
TSP1_CCN 222..265 CDD:465952 17/44 (39%)
GHB_like 285..347 CDD:473907 23/132 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.