DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ccn and ccn1

DIOPT Version :10

Sequence 1:NP_730294.1 Gene:Ccn / 39972 FlyBaseID:FBgn0052183 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_001001826.3 Gene:ccn1 / 403033 ZFINID:ZDB-GENE-040426-3 Length:369 Species:Danio rerio


Alignment Length:274 Identity:73/274 - (26%)
Similarity:108/274 - (39%) Gaps:91/274 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 CSVGNTTFAHGVTFKLDCKTQCVCENGRHACSTLCPNE-QLPAPEDTISCRSPRLVEVPGHCCKM 104
            |...:..:.:|.:|:.:||.||.|.:|...|..|||.| .|||    :.|.:||||:|||.||:.
Zfish    95 CEYSSRIYQNGESFQPNCKHQCTCMDGAVGCVPLCPQELSLPA----LGCANPRLVKVPGRCCEE 155

  Fly   105 WLCENP---------------TADVYATCHNSTTSGN---------------------------- 126
            |:|::.               ..:|........|:.|                            
Zfish   156 WVCDDEQQGGKLIESANKMPGNKEVGGDSEKELTNKNELISVIMNTKLKSLPAFRSHQMEKCIVQ 220

  Fly   127 ---WTACSRSCGLGTATRHTTTHAGCHQLSNLRLCENRRCDKDDHEDNKWSRSRPLTHKRKQHRA 188
               |:.||||||.|.:||.|..:|.|..:...|:||.|.|.:..|..                  
Zfish   221 TTGWSQCSRSCGTGISTRITNNNAECKLMKESRICEVRPCSQSPHTS------------------ 267

  Fly   189 HSHSHQRYHHHKEHEEPAHRIRKGHEC-RSIQRLGPARIRLGECVSRKLYRPKLCGRCHRGVKCC 252
                                ::||.:| |:.:.:.|.:.....|.|.|.|||:.||.|..| :||
Zfish   268 --------------------LKKGKKCNRTKKSVTPVKFSYAGCSSLKKYRPRFCGSCVDG-RCC 311

  Fly   253 APAVSTTIQVELLC 266
            :|..:.||:|:..|
Zfish   312 SPQNTRTIRVKFRC 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CcnNP_730294.1 VWC 41..104 CDD:450195 27/63 (43%)
TSP1_spondin 118..163 CDD:480609 19/75 (25%)
ccn1NP_001001826.3 None

Return to query results.
Submit another query.