DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6052 and PDR11

DIOPT Version :9

Sequence 1:NP_649002.3 Gene:CG6052 / 39971 FlyBaseID:FBgn0036747 Length:1725 Species:Drosophila melanogaster
Sequence 2:NP_012252.1 Gene:PDR11 / 854802 SGDID:S000001275 Length:1411 Species:Saccharomyces cerevisiae


Alignment Length:1346 Identity:241/1346 - (17%)
Similarity:439/1346 - (32%) Gaps:474/1346 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   547 KNYGKLKAVKGISLKMHRNEITVLLGHNGAGKTTTINMITGIVKPTSGTAIVNGYDIRTHLAKAR 611
            ||.|.|: :..|:.:.:..|:.::||:                 |||  |:..|      |....
Yeast    42 KNVGHLE-ISDITFRANEGEVVLVLGN-----------------PTS--ALFKG------LFHGH 80

  Fly   612 ESLGICPQNNILFKEMSVRD------HIIFFSKLKGIRGTKAVENEVGKYMTM------------ 658
            :.|...|:.:|.||:...:.      |.|.::..:.|.         ..|:|:            
Yeast    81 KHLKYSPEGSIRFKDNEYKQFASKCPHQIIYNNEQDIH---------FPYLTVEQTIDFALSCKF 136

  Fly   659 -------LKLQD------------KSYVA---AKNLSGGMKRKLSLCCALCGNAKVVLCDEPSSG 701
                   ::::|            |:||.   .:.:|||.::::|:......|..|.|.|..:.|
Yeast   137 HIPKQERIEMRDELLKEFGLSHVKKTYVGNDYVRGVSGGERKRISIIETFIANGSVYLWDNSTKG 201

  Fly   702 IDAAGRRSLWDLLQS-EKDGRTILLT---------THYMDEADVLGDRIAILSEGKLQCQGTSFY 756
            :|:|.......:.|. .|..|::...         ....|:..:|||...:......:|. |.|:
Yeast   202 LDSATALEFLSITQKMAKATRSVNFVKISQASDKIVSKFDKILMLGDSFQVFYGTMEECL-THFH 265

  Fly   757 ----LKKRFGTGYLLVCIMQSGCDVGAVTQLIR-KY-----------VPPIKPE--RVLG----T 799
                :||.           .:.|.:..:|.::. |:           .|.:..|  :.|.    |
Yeast   266 DTLQIKKN-----------PNDCIIEYLTSILNFKFKETSNSIVGLDTPSVVSEENQALNINNET 319

  Fly   800 EL-TYRLPTEYSKKFAELLQDLDEKCAQLQLVGYGLSGATLEDVFMAVNTDKRVQGGAEGPPVDG 863
            :| |..:.:.|.|.:..:.....::|             |.:|    ||.|       :..|: .
Yeast   320 DLHTLWIQSPYYKHWKAITSKTVQEC-------------TRKD----VNPD-------DISPI-F 359

  Fly   864 SIDFKELVFDSKTREKRRIRRCFMFWQALFLKKFYTTTRNYWLLGIQLVLPIAVMALTILNSRGG 928
            ||..|..:.....|...||                ...|||.   |...:.:.|.:|.|     |
Yeast   360 SIPLKTQLKTCTVRAFERI----------------IGDRNYL---ISQFVSVVVQSLVI-----G 400

  Fly   929 RIYYELPAMPISINQYSSAYVVLEDNTTDKTSSLADAYSKHLEHYARRCTLLRTGDLKFEDYILS 993
            .::|.:|...|.                        ::|:              |.|.|...:. 
Yeast   401 SLFYNIPLTTIG------------------------SFSR--------------GSLTFFSILF- 426

  Fly   994 HDVNHSRRIDFHFLAGLTVSENNFIVWLNNKPLHTAPLTLNLLHNALAIKLLGQDASTYVTNEPL 1058
                    ..|..||.:..|       ...:|:....:.|:..:|.:         .|..||   
Yeast   427 --------FTFLSLADMPAS-------FQRQPVVRKHVQLHFYYNWV---------ETLATN--- 464

  Fly  1059 PYSDDTRTLRLNKGQVLGAEISINLSLTMCFITAFYAIPIIRERETRAKLLQFLSGVDVCAYWTS 1123
                                              |:                     |.|:.:..
Yeast   465 ----------------------------------FF---------------------DCCSKFIL 474

  Fly  1124 HIVWDYLVFVLSALSSILTIAAFKEIGYITPLDLSRYFYMLLIFGFPGIMLSYAASGCFSDAATG 1188
            .:::..:::.|:.|.                .:.:|:|..||...    :.::.....|:..|..
Yeast   475 VVIFTIILYFLAHLQ----------------YNAARFFIFLLFLS----VYNFCMVSLFALTALI 519

  Fly  1189 FTRISIINTLMGTGLFLMFMTLNFEAFQLKDVAEKLAWYFRLSPHYSLASSTHSIHIGYNIRRGC 1253
            ...:|:.|.|.|..|..:.|..::..: :||:.....|...|:|......:..|..: :|::..|
Yeast   520 APTLSMANLLAGILLLAIAMYASYVIY-MKDMHPWFIWIAYLNPAMFAMEAILSNEL-FNLKLDC 582

  Fly  1254 --SIGGIRKLPKQLRCRNVPI---CCDIPG----------------------YYGWRKPGVLVEI 1291
              ||     :|:.....|:..   .|...|                      ::.||..|:::  
Yeast   583 HESI-----IPRGEYYDNISFSHKACAWQGATLGNDYVRGRDYLKSGLKYTYHHVWRNFGIII-- 640

  Fly  1292 TYMIMLGSTLFLLIVMHDAKVCNLIA----------EKL--GNCFSKR-------KRVEGGTSIE 1337
                  |...|.|.       |:|:|          |.|  .|.:.||       ::....::|.
Yeast   641 ------GFLCFFLF-------CSLLAAEYITPLFTRENLLRWNNYLKRYCPFLNSQKKNNKSAIT 692

  Fly  1338 NDSVVAEQRVVREMINSGRKDVPLLVYKISKRYRSKLAVKAISFHVPHAECF------------- 1389
            |:..|...:......::....||.:.::....|..|...:.::.|...:...             
Yeast   693 NNDGVCTPKTPIANFSTSSSSVPSVSHQYDTDYNIKHPDETVNNHTKESVAMETQKHVISWKNIN 757

  Fly  1390 ---------------------GLLGINGAGKTSTFKMLA--GDEKITSGEAYIDG---TNISTHK 1428
                                 .|:|.:|||||:...:|:  .:..:.:||..|||   |||...:
Yeast   758 YTIGDKKLINDASGYISSGLTALMGESGAGKTTLLNVLSQRTESGVVTGELLIDGQPLTNIDAFR 822

  Fly  1429 VYRKIGYCPQFDALFEDLTGRETLNIYCLLRGVQRRHVTPICWGLAISFGFAKHMDKQTKHYSGG 1493
              |.||:..|.|...|.||.||:|.|.|:|||...|....:     :|.......:|.....|..
Yeast   823 --RSIGFVQQQDVHLELLTVRESLEISCVLRGDGDRDYLGV-----VSNLLRLPSEKLVADLSPT 880

  Fly  1494 NRRKLSTAISVLGNPS-VLYLDEPTSGMDPAARRQLWQIIGLIRTAGKSIVLTSH--SMDECEAL 1555
            .|:.||..:.::..|| :|:|||||||:|..|...:.|.:..:...|::|:.|.|  |.......
Yeast   881 QRKLLSIGVELVTKPSLLLFLDEPTSGLDAEAALTIVQFLKKLSMQGQAILCTIHQPSKSVISYF 945

  Fly  1556 CSRLAIMVDGEFKCLGSVQSLKNQFSKGLILKVKVKHKKK-TFQRVVEDSSSSNDKKSISETDLK 1619
            .:...:...||....||:.:..:.|         |.|.:: ||.|.::                 
Yeast   946 DNIYLLKRGGECVYFGSLPNACDYF---------VAHDRRLTFDREMD----------------- 984

  Fly  1620 FLQMASVMESSQADRILKVNRFISKEIPDAELKEEYNGLITYYIPHSKTLSKI--FQLLETNSHK 1682
                      :.||.::.|....|..||..:.::..:..|...:.:.|....|  .:|.:::..|
Yeast   985 ----------NPADFVIDVVGSGSTNIPMDDAEKPTSSKIDEPVSYHKQSDSINWAELWQSSPEK 1039

  Fly  1683 LNI-EDYLIMQTRLEEIFLDFA-------SKRDSSDIFTKRIYSCS 1720
            :.: :|.|:::....:..:||.       |..:...:.|||.|.|:
Yeast  1040 VRVADDLLLLEEEARKSGVDFTTSVWSPPSYMEQIKLITKRQYICT 1085

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6052NP_649002.3 rim_protein 21..>54 CDD:130324
rim_protein <149..1709 CDD:130324 236/1333 (18%)
PDR11NP_012252.1 3a01205 56..1381 CDD:273362 236/1331 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 105 1.000 Inparanoid score I1418
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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