DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6052 and ABCA5

DIOPT Version :9

Sequence 1:NP_649002.3 Gene:CG6052 / 39971 FlyBaseID:FBgn0036747 Length:1725 Species:Drosophila melanogaster
Sequence 2:NP_001326002.1 Gene:ABCA5 / 823930 AraportID:AT3G47760 Length:936 Species:Arabidopsis thaliana


Alignment Length:982 Identity:247/982 - (25%)
Similarity:431/982 - (43%) Gaps:216/982 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 GDWDKLKLLMWKNWILQWNQKMQIVFALVLPVLFLCLILV-LRIIV------------------- 61
            |.:.:...|..||...|.......|..:|:| .:||::|| ::::.                   
plant     8 GFFTQANSLFRKNLTYQKRNIWSNVRLIVIP-FYLCVLLVGIQVLFDTQVNNSADNRCGCRCIDK 71

  Fly    62 -----LPEKMDEIRYPTVSISDLNLYMRMVPLGNRILH----ENGSLNIPRNFLCYTPNNPINSA 117
                 ..:|...::|.:.:.:....:....|| ..:||    |..|.:..|:....|.:.|:...
plant    72 NGDGKCGQKSCGLQYSSQNQAFFCAFPNPPPL-LPLLHIPRPETRSSDRDRDSCRQTGSCPVTIL 135

  Fly   118 IVG-----ATAIRLRLLGTRAYDTALHMEQDMVLHNFLAGVQFEDNENVNTN--DAGY------- 168
            :.|     .|.|...||.|   ..|:: ..|:.|.|....|....::...||  |.|.       
plant   136 LTGNNHSLGTTISRNLLST---SFAMN-SSDLFLRNLAYNVLGTTSKADYTNYLDPGILSDLPIF 196

  Fly   169 -------PLNLNYS-------LRFPSELRTMQGPIIDTWRTSRLFLSYDTSGSRNRLDNDGGVPV 219
                   |....:|       |.|..|:|.::|  ::.||.:.:.:|.:             :..
plant   197 NVQPRCTPDTTTFSFPFRQSPLEFHKEVRCVEG--LNLWRNNSIEISNE-------------IFK 246

  Fly   220 GYIREGFLPIQHALTMSWLALASGVTDTGIPAIHL--------------QRFPY----------- 259
            || |:|.|    ...::.:|.|..:.||.|...::              :|..|           
plant   247 GY-RQGNL----EEIINEVAAAYDLMDTDINNFNVTIWYNSTYKGDLRDRRVKYVRVPRSVNLVS 306

  Fly   260 RAYTYDQLLSGLRQLLPF--------------------------VILLSFIYPASTVTKYVTSEK 298
            .||......||.:.|..|                          ||||  ::|....:  :..||
plant   307 NAYLEFLQGSGTKMLFDFVKEMPKQETRLRLEMASLIGPIFFTWVILL--LFPVMLTS--LVYEK 367

  Fly   299 ELQLKEIMKLIGVHNWLHWV---AWFVKSYIMLMLVVFLIMSLIMVKFYASVAVLTFSSWVPVLL 360
            :..|:.|||:.|:.:..:|:   |:|:...|:.::.:.:..|.|.:||:      .|:.:....:
plant   368 QQHLRIIMKMHGLGDGPYWMITYAYFLAISIVYIICLMIFGSAIGLKFF------RFNDYSIQFI 426

  Fly   361 FLHTYVVTSVCLCFMLAVLFSKASTASAVAAIFWFLTYIPYSFGY-YYYERLSL-MSKLLISLIF 423
            |....:...:.:.|:::..|||..|||..|.::.|.:.:..:|.: :..|.||. .|.:.|..::
plant   427 FYFLCINLQISIAFLVSSAFSKIETASVAAYLYVFGSGLLGAFLFQFLLEGLSFPRSWIYIMELY 491

  Fly   424 SNSALGFGIHVIVMW------EGTGEGITWRNMFHPVSTDDSLTLFYIIMTMSFGSIMFISICLY 482
            ...:|..|::....:      .|:| |:.|:: |:..:.::   :||||:...|.:::   ...|
plant   492 PGFSLYRGLYEFSQYAFKRNLNGSG-GMKWKD-FNDSAMEE---IFYIIIVEWFVALI---AAYY 548

  Fly   483 VEQV-------------------FPGEYGVPRRWNFMCHKNYWRQYVPSLNIVPSFQTILHGSAK 528
            .:::                   .|..||:.|:             |.::.|......:.|...|
plant   549 TDKISSSGIDPFFFLKNQNPFKKSPSPYGLQRQ-------------VSAIAIEMEKLDVAHERVK 600

  Fly   529 AKSCRRAREVG--IQLFNLQKNY------GKLKAVKGISLKMHRNEITVLLGHNGAGKTTTINMI 585
            .:........|  |...||:|.|      .:..||:|:||.:...|...:||.||||||:.|||:
plant   601 VEQLMLETSTGHAIVCDNLKKVYPCRDGNPQKMAVRGLSLAVPSGECFGMLGPNGAGKTSFINMM 665

  Fly   586 TGIVKPTSGTAIVNGYDIRTHLAKARESLGICPQNNILFKEMSVRDHIIFFSKLKGIRGT---KA 647
            ||::|||||.|.|:|.||...:.....|:|:|||:::|::.::.|:|::|:.:||.::|:   :|
plant   666 TGLMKPTSGAAFVHGLDICKDMDIVYTSIGVCPQHDLLWETLTGREHLLFYGRLKNLKGSDLDQA 730

  Fly   648 VENEVGKYMTMLK--LQDKSYVAAKNLSGGMKRKLSLCCALCGNAKVVLCDEPSSGIDAAGRRSL 710
            ||..: |.:.:.:  :.||   .|...||||||:||:..:|.|:.|||..||||:|:|.|.||||
plant   731 VEESL-KSVNLFRGGVADK---PAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRRSL 791

  Fly   711 WDLLQSEKDGRTILLTTHYMDEADVLGDRIAILSEGKLQCQGTSFYLKKRFGTGYLLVCIMQSGC 775
            |..::..|:...|:||||.|:||:.|.||:.|..:|:|||.|....||.|:|..|:|.....|..
plant   792 WTAIKRAKNHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCVGNPKELKARYGGSYVLTMTTPSEH 856

  Fly   776 DVGAVTQLIRKYVPPIKP-ERVLGTELTYRLPTEYSKKFAELLQDLDEKCAQLQLVGYGLSGATL 839
            :.. |..|::...|..|. ..:.||: .:.:|.| ..:.:|:.|.:::.....::..:||:..||
plant   857 EKD-VEMLVQDVSPNAKKIYHIAGTQ-KFEIPKE-EVRISEVFQAVEKAKDNFRVFAWGLADTTL 918

  Fly   840 EDVFMAV 846
            ||||:.|
plant   919 EDVFIKV 925

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6052NP_649002.3 rim_protein 21..>54 CDD:130324 9/32 (28%)
rim_protein <149..1709 CDD:130324 214/816 (26%)
ABCA5NP_001326002.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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