DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6052 and abca4a

DIOPT Version :9

Sequence 1:NP_649002.3 Gene:CG6052 / 39971 FlyBaseID:FBgn0036747 Length:1725 Species:Drosophila melanogaster
Sequence 2:NP_001002206.1 Gene:abca4a / 798993 ZFINID:ZDB-GENE-050517-3 Length:280 Species:Danio rerio


Alignment Length:375 Identity:76/375 - (20%)
Similarity:130/375 - (34%) Gaps:112/375 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 VGDWDKLKLLMWKNWILQWNQKMQIVFALVLP-VLFLCLILVLRIIVLPEKMDEIRYPTVSISDL 79
            :|...:::||:||||.::..||.::...::.| |||:.|:.:.:...| .:..|..:|       
Zfish     1 MGTNSQVRLLLWKNWTVRKRQKTRLFMEIMWPVVLFIGLVWLRKANPL-YRQHECHFP------- 57

  Fly    80 NLYMRMVPLGNRILHENGSLNIPRNFLCYTPNNPINSAIVGATAIRLRLLGTRAYDTALHME-QD 143
                      |:.:..:|.|...:..:| ..|||.....            ||.....|... .:
Zfish    58 ----------NKAMPSSGVLPWIQGIVC-NANNPCFQHT------------TRGESPGLVSNYNN 99

  Fly   144 MVLHNFLAGVQ---FEDNENVNTNDAGYPLNLNYSLRFPSELRTMQGPIIDTWRTSRLFLSYDTS 205
            .:|..|.:..|   |||.|.:...            |...||..|.. .:||.||:.     :..
Zfish   100 SILARFWSDAQELLFEDTEFLQLG------------RLWQELMAMSS-FMDTLRTNP-----EAI 146

  Fly   206 GSRNRLDNDGGVPVGYIREGFLPIQHALTMSWLALASGVTDTGIPAIHLQRFPYRAYTYDQLLSG 270
            ..|       |:.|    |..|.....||                |..|:..|.......||::.
Zfish   147 AGR-------GIKV----EDILKDDETLT----------------AYLLRDVPLTESVVQQLINS 184

  Fly   271 LRQLLPFVILLSFIYPASTVTKYVTSEKELQLKEIM-------KLIGVHNWLHWVAWFVKSYIML 328
              |:.|              .::.....:|.||:|.       :.:...|  .|..:.|::.:.:
Zfish   185 --QIRP--------------EQFAYGVPDLHLKDIACSQTLLERFLIFPN--RWGLYAVRNAMCV 231

  Fly   329 MLVVFLIMSLIMVKFYASVAVLTFSSWVPVLLFLHTYVVTSVCLCFMLAV 378
            :....|  .:|..||||::........|.:|    |::|.::.|...|.|
Zfish   232 LTPQRL--QIIEDKFYANLDFFKLFRLVSLL----THLVKTIMLEMALGV 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6052NP_649002.3 rim_protein 21..>54 CDD:130324 12/33 (36%)
rim_protein <149..1709 CDD:130324 48/240 (20%)
abca4aNP_001002206.1 rim_protein 1..>260 CDD:130324 70/354 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582260
Domainoid 1 1.000 168 1.000 Domainoid score I3783
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53524
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.750

Return to query results.
Submit another query.