DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6052 and abca8

DIOPT Version :10

Sequence 1:NP_649002.3 Gene:CG6052 / 39971 FlyBaseID:FBgn0036747 Length:1725 Species:Drosophila melanogaster
Sequence 2:XP_031749971.1 Gene:abca8 / 549630 XenbaseID:XB-GENE-1005441 Length:1619 Species:Xenopus tropicalis


Alignment Length:1810 Identity:464/1810 - (25%)
Similarity:827/1810 - (45%) Gaps:351/1810 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LMWKNWILQWNQKMQIVFALVLPVLFLCLILVLRIIVLPEKMDEIRYPTVSISDLNLYMRMVPLG 89
            |.|||.:|:|.:|...:...:..:.|:.::|::.::.| ....::.|.:.:              
 Frog    17 LFWKNLLLKWRRKWHTILEWLQNLAFVLVMLLISVMGL-STFVQLEYNSPA-------------- 66

  Fly    90 NRILHENGSLNIPRNF-LCYTPNNPINSAIVGATAIRLRLLGTRA--YDTALHMEQDMVLHNFLA 151
             .:|....:::...|| :.|...:|.:..|:...|..:.:.|.:.  |....::..||. :..:.
 Frog    67 -EVLGRLDAVDRSNNFKVGYVYTSPTSRDIMEKVAKSIIIPGIKVQEYSDEGNLLDDMT-NKAVV 129

  Fly   152 GVQFEDNENVNTNDAGYPLNLNYSLRFPSELRTMQG-------PIIDTWRTSRLFLSYDTSGSRN 209
            ||.|.|..:.:..   ||:|   ::.:|::.....|       ....|:..||.|||...|    
 Frog   130 GVTFVDKFSYHIR---YPIN---NIAYPNDYFAFMGFCAPGSQACYPTYYWSRQFLSLQAS---- 184

  Fly   210 RLDNDGGVPVGYIREGFLPIQHALTMSWLALASGVTDTGIPAIHLQRFPYRAYTYDQLLSGLRQL 274
             :|:       .|.|  |...|::   |..:||.||      :.::          ..::..||.
 Frog   185 -IDS-------AIIE--LTSNHSV---WDNMASVVT------VRMK----------STVASFRQY 220

  Fly   275 L---PFVILLSFIYPA--STVTKYVTSEKELQLKEIMKLIGVHNWLHWVAWFVKSYIMLMLVVFL 334
            .   .|:.|:...|.:  ..::.|:|.|:. :::|::|::.:.:...|::|.: .|:..:|::..
 Frog   221 FHIGTFIFLMPMCYVSLMYLLSLYITRERR-EMRELLKMMRLKDLAFWLSWGL-LYLFYILILAN 283

  Fly   335 IMSLIMVKFYASVAVLTFSSWVPVLLFLHTYVVTSVCLCFMLAVLFSKASTASAVAAIFWFLTYI 399
            :|:|:...|     |...||:..::.....|.:..:...|||:.|| ::..|:|:|.  :|:|..
 Frog   284 LMTLVTKAF-----VFVQSSYGIIMFLFVFYGIALMSFTFMLSALF-RSPRATAIAG--FFITLF 340

  Fly   400 PYSFGYYYYERLSLMSK-------LLISLIFSNSALGFGIHVIVMWEGTGEGITWRNMFHPVSTD 457
            ..:.|      |.|:.|       :|:| ||...|...|:...|..|...:|:.:.:|     ..
 Frog   341 LSALG------LVLLRKDFPQALAVLLS-IFPQFAFAVGLTESVHMESDLQGVYFSDM-----AG 393

  Fly   458 DSLTLFYIIMTMSFGSIMFISICLYVEQVFPGEYGVPRRWNFMCHKNYW--RQYVPSL------- 513
            ||..:....::::..||.::.:.||.|:|...::|:.....|....:||  ::..|.|       
 Frog   394 DSSHVLSSFISLALDSIFYMGLTLYFEKVLADKHGLKYEPFFFMKSSYWSKKKLSPVLTQTEDSG 458

  Fly   514 --NIVPSFQTI---LHGSAKAKSCRRAREVGIQLFNLQKNYGKLKAVKGISLKMHRNEITVLLGH 573
              ::...|:.:   |||    |...|..:|..:..:..||   ::|::|:.|.::..:||.||||
 Frog   459 ESSMGEFFERVPIDLHG----KEAIRINKVMKKYCDQDKN---IEALRGLDLNIYEGQITALLGH 516

  Fly   574 NGAGKTTTINMITGIVKPTSGTAIVNGYDI--RTHLAKARESLGICPQNNILFKEMSVRDHIIFF 636
            :||||||.:|:::|:...:.|:|.|..|.:  ..||.:.::..|.|||:::.|..::|::::..|
 Frog   517 SGAGKTTLLNILSGLCPASDGSATVYSYKLSDMQHLEEIKKRTGFCPQSDVKFNPLTVKENLTVF 581

  Fly   637 SKLKGIRGTKAVENEVGKYMTMLKLQDKSYVAAKNLSGGMKRKLSLCCALCGNAKVVLCDEPSSG 701
            :|:||| ..|.::::|.|.::.|::.|...|.|.|||||.:|||:|..||.|:.:|:|.|||::|
 Frog   582 AKIKGI-PRKQIKHKVQKVLSDLQMNDIENVEADNLSGGQRRKLTLGIALLGDPQVLLLDEPTAG 645

  Fly   702 IDAAGRRSLWDLLQSEKDGRTILLTTHYMDEADVLGDRIAILSEGKLQCQGTSFYLKKRFGTGYL 766
            :|...|..:|.:|:..|..|..|.:|.:|||||:|.||.|::|.|:|:|.|:|.:||:::|.||.
 Frog   646 LDPCSRHHIWTILKENKADRVTLFSTQFMDEADILADRKAVISNGRLKCVGSSLFLKRKWGIGYH 710

  Fly   767 LVCIMQSGCDVGAVTQLIRKYVPPIKPERVLGTELTYRLPTEYSKKFAELLQDLDEKCAQLQLVG 831
            |...:...|||..:|.:|:::||..|.......||||.||.|....|.:|...||.:... .:|.
 Frog   711 LRMQVSPTCDVELMTSIIKQHVPDAKLTAQNEEELTYTLPFENMDAFPDLFLHLDGQVGN-SIVN 774

  Fly   832 YGLSGATLEDVFMAVNTDKRVQGG-------AEGPPVD------GSIDFKELVFDSKT------- 876
            ||:|..||:|||:.:..:..::.|       ..|.|.|      |..|...|:.||.:       
 Frog   775 YGVSMTTLDDVFLKLEGEGEIEKGDYGVFSPDSGAPEDKDCFSAGMEDSLLLMSDSGSATLSGLS 839

  Fly   877 --REK----RRIRRCFMFWQALFLKKFYTTTRNYWLLGIQLVLPIAVMALTILNSRGGRIYYELP 935
              |::    .|:|       .|.||....|.|:..:|....::||.:..:.|      :|:::: 
 Frog   840 LWRQQVLAIARVR-------LLKLKHDSKTFRSILILLALFIIPIIMTTIVI------KIFHKV- 890

  Fly   936 AMPISINQYSSAYVVLEDNTTDKTSSLADAYSKHLE-HYARRCTLLR----TGDLKFEDY----- 990
                              .|.:.|.||   |.:|.| .:.|..|.|:    ||. ..||:     
 Frog   891 ------------------ITWELTPSL---YFQHPEDRFHRYYTDLQIYNNTGS-SIEDFLGALK 933

  Fly   991 ---ILSHDVNHSRRIDFHFLAG-LTVSE----NNFIVWLNNKPLHTAPLTLNLLHNALAIKLLGQ 1047
               |....||....::..|..| :.||:    ..|.:..|.|..:..|:.:|::.||| :.:...
 Frog   934 EQNIAVQVVNGEYDMETTFYRGAIEVSQATKGYGFTIVGNPKAQNALPVLVNIISNAL-LMIFNS 997

  Fly  1048 DASTYVTNEPLP--YSDDTRTLRLNKGQVLGAEISINLSLTMCFITAFYAIPIIRERETRAKLLQ 1110
            .....|.|.|:.  ..:|..::....|        ..|.|....:...:|:..|.:|..:|:...
 Frog   998 TEHIRVWNHPVTEYLVEDFESVTFYSG--------FMLLLFASGLAPHFAMSSIEDRRIKARTQL 1054

  Fly  1111 FLSGVDVCAYWTSH------IVWDYLVFVLSALSSILTIAAFKEIGYITPLDLSRYFYMLLIFGF 1169
            .:||:...|||...      :.|..|..:::.|.|                     |...:||.|
 Frog  1055 RISGIFPSAYWFGQALVDVPLYWILLFLMVAILFS---------------------FNSQVIFSF 1098

  Fly  1170 -PGIMLSYAASGCFSDAATGFTRISIINTLMG------TGLFLMFMTLNFEAFQLKDVAEKLAWY 1227
             |.|:|   .:|.....|.....:.:|:.:.|      .|..:.|:...|....|.||.      
 Frog  1099 VPAIIL---ITGVIGYGAAVVLYVYVISFVFGRGKSHHDGWSIFFVISAFIPMILLDVV------ 1154

  Fly  1228 FRLSPHYSLASSTHSIHIGYNIRRGCS-IGGIRKLPKQLRCRNVPICCDIPGYYGWRKPGVLVEI 1291
                       ||:::.|.:.:....| :.||      :||.:|        |:..|.......:
 Frog  1155 -----------STYAVGITFFLLLPASTLSGI------IRCIDV--------YHFDRSTLEDEHL 1194

  Fly  1292 TYMI--MLGSTLFLLIVMHDAKVCNLIAEKLGNCFSKRK----RVEGGTSIENDSVVAEQRVVRE 1350
            .|:.  .|...:|.:|:....:|..:.:.|. |.|.::|    :.|.|...:.:.:...:||...
 Frog  1195 LYLFFPFLHIVIFSVILWVLERVFGMRSLKT-NLFYRKKVQKNQEELGEDTDEEVLAERERVKMS 1258

  Fly  1351 MINSGRKDVPLLV-------YKISK-----RYRSKLAVKAISFHVPHAECFGLLGINGAGKTSTF 1403
            ...:..::.|:::       ||:.|     :...|.|.|.|||.|...|..||||.||||||::.
 Frog  1259 STTNNMEEKPIIIVDSLRKEYKVKKGKSFFKKNKKAATKNISFCVRKGEVLGLLGPNGAGKTTSI 1323

  Fly  1404 KMLAGDEKITSGEAYIDGTN-----ISTHKVYRKIGYCPQFDALFEDLTGRETLNIYCLLRGVQR 1463
            .||||:.:.|:||..:.||:     .|.:.....:|||||.:.|:.:||.::.|.||..::|:::
 Frog  1324 YMLAGEIRPTAGEVLLCGTDPDKSQNSQYDPTGSLGYCPQDNPLWPNLTVKQHLEIYAAVKGLKK 1388

  Fly  1464 RHVTPICWGLAISFGFAKHMDKQTKHYSGGNRRKLSTAISVLGNPSVLYLDEPTSGMDPAARRQL 1528
            :........::.:....:|::|..:..|.|..||:..|||:||||:::.||||::|:||..:::|
 Frog  1389 KDAETAIKRVSEALELKEHLEKAARKLSAGVSRKVCFAISMLGNPNIVLLDEPSTGLDPKGQQRL 1453

  Fly  1529 WQII-GLIRTAGKSIVLTSHSMDECEALCSRLAIMVDGEFKCLGSVQSLKNQFSKGLILKVKVKH 1592
            |:.| ...|...:..:||:|.|:|.||:|.|:||||.|:.:|:||:|.||::|.||.:|::|||:
 Frog  1454 WRAIRSAFRNKDRGAILTTHYMEEAEAVCDRVAIMVSGKLRCIGSIQQLKSKFGKGYLLEIKVKN 1518

  Fly  1593 KKKTFQRVVEDSSSSNDKKSISETDLKFLQMASVMESSQADRILKVNRFISKEIPDAELKEEYNG 1657
                                                |:|.|:|   :..|.:..|.|..::.::.
 Frog  1519 ------------------------------------SNQVDQI---HNEIIQIFPHAARQDRFSS 1544

  Fly  1658 LITYYIP--HSKTLSKIFQLLETNSHKLNIEDYLIMQTRLEEIFLDFASKRDSSD 1710
            |:.|.||  :.::|||.|..||......|||:|...|..|.::|::...:::..|
 Frog  1545 LLVYKIPVENVQSLSKAFLDLEEAKRAYNIEEYSFSQPTLTQVFIELTKEQERED 1599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6052NP_649002.3 rim_protein 21..>54 CDD:130324 8/28 (29%)
rim_protein <149..1709 CDD:130324 441/1680 (26%)
abca8XP_031749971.1 rim_protein <225..1601 CDD:130324 414/1546 (27%)

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