Sequence 1: | NP_649002.3 | Gene: | CG6052 / 39971 | FlyBaseID: | FBgn0036747 | Length: | 1725 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038965774.1 | Gene: | Abca1 / 313210 | RGDID: | 631344 | Length: | 2263 | Species: | Rattus norvegicus |
Alignment Length: | 1994 | Identity: | 557/1994 - (27%) |
---|---|---|---|
Similarity: | 905/1994 - (45%) | Gaps: | 479/1994 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 17 GDWDKLKLLMWKNWILQWNQKMQIVFALVLPVLFLCLILVLRIIV--------LPEKMDEIRYPT 73
Fly 74 VSISDLNLYMRMVPLGNRILHENGSL---------------NIPRNFLCYTPN--NPINSAIVGA 121
Fly 122 TAIRLRLLGTRAYDTALHMEQDMVL---HNFLAGVQFEDNENVNTNDAGYPLNLNYSLRFPSELR 183
Fly 184 TMQGPIIDTWRTSRLFLSYDTSGSRNRLDNDGGVPVGYIREGFLPIQHALTMSWLALASGV-TDT 247
Fly 248 GIPAIHLQRFPYRAYTYDQLLSGLRQLLPFVILLSFIYPASTVTKYVTSEKELQLKEIMKLIGVH 312
Fly 313 NWLHWVAWFVKSYIMLMLVVFLIMSLIMVKFYASVAVLTFSSWVPVLLFLHTYVVTSVCLCFMLA 377
Fly 378 VLFSKASTASAVAAIFWFLTYIPYSFGYYYYERLSLMSKLLISLIFSNSALGFGIHVIVMWEGTG 442
Fly 443 EGITWRNMFHPVSTDDSLTLFYIIMTMSFGSIMFISICLYVEQVFPGEYGVPRRWNFMCHKNYWR 507
Fly 508 QYVPSLNIVPSF-QTILHGSAKAKSCRRAREV-----------GIQLFNLQKNY--GKLKAVKGI 558
Fly 559 SLKMHRNEITVLLGHNGAGKTTTINMITGIVKPTSGTAIVNGYDIRTHLAKARESLGICPQNNIL 623
Fly 624 FKEMSVRDHIIFFSKLKGIRGTKAVENEVGKY-----MTMLKLQDKSYVAAKNLSGGMKRKLSLC 683
Fly 684 CALCGNAKVVLCDEPSSGIDAAGRRSLWDLLQSEKDGRTILLTTHYMDEADVLGDRIAILSEGKL 748
Fly 749 QCQGTSFYLKKRFGTGYLLVCIMQ------SGC-------------------------------- 775
Fly 776 ------DVGAVTQLIRKYVPPIKPERVLGTELTYRLPTEYSKK--FAELLQDLDEKCAQLQLVGY 832
Fly 833 GLSGATLEDVFMAVNTDKRVQGGAEGPPVDG-------------------------SIDFKELVF 872
Fly 873 DSKTREK-----------------RRIRRCF--MFWQALFL-----KKFYTTTRNYWLLGIQLVL 913
Fly 914 PIAVMALTILNSRGGRIYYELPAMPISINQYSSAYVVLEDNTTDK--TSSLADAYSKHLEHYARR 976
Fly 977 C-------------------------TLL------------------------------------ 980
Fly 981 ---------RTGDL-------KFEDYIL------------------------------------- 992
Fly 993 SHDVNHS-----------------RRIDF--HFLAGLTVSENNFIVWLNNKPLHTAPLTLNLLHN 1038
Fly 1039 ALAIKLL--GQDASTY-VT--NEPLPYSDDTRTLRLNKGQV---------LGAEISINLSLTMCF 1089
Fly 1090 ITAFYAIPIIRERETRAKLLQFLSGVDVCAYWTSHIVWDYLVFVLSALSSILTIAAFKEIGYITP 1154
Fly 1155 LDLSRYFYMLLIFGFPGIMLSYAASGCFSDAATGFTRISIINTLMG-TGLFLMFMTLNFEAFQLK 1218
Fly 1219 DVAEKLAWYFRLSPHYSLASSTHSIHIGYNIRRGCSIGGIRKLPKQLRCRNV-PICCDIPGYYGW 1282
Fly 1283 RKPGVLVEITYMIMLGSTLFLLIVMHDAKVCNLIAEKLGNCFSKRKRVEGGTSIENDSVVAEQRV 1347
Fly 1348 VREMINSGRKDVPLLVYKISKRYRSKL--AVKAISFHVPHAECFGLLGINGAGKTSTFKMLAGDE 1410
Fly 1411 KITSGEAYIDGTNI--STHKVYRKIGYCPQFDALFEDLTGRETLNIYCLLRGVQRRHVTPIC-WG 1472
Fly 1473 LAISFGFAKHMDKQTKHYSGGNRRKLSTAISVLGNPSVLYLDEPTSGMDPAARRQLWQIIGLIRT 1537
Fly 1538 AGKSIVLTSHSMDECEALCSRLAIMVDGEFKCLGSVQSLKNQFSKGLILKVKVKHKKKTFQRVVE 1602
Fly 1603 DSSSSNDKKSISETDLKFLQMASVMESSQADRILKVNRFISKEIPDAELKEEYNGLITYYIPHS- 1666
Fly 1667 KTLSKIFQLLETNSHKLNIEDYLIMQTRLEEIFLDFASKRDSSD 1710 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CG6052 | NP_649002.3 | rim_protein | 21..>54 | CDD:130324 | 5/32 (16%) |
rim_protein | <149..1709 | CDD:130324 | 529/1831 (29%) | ||
Abca1 | XP_038965774.1 | rim_protein | 1..2238 | CDD:130324 | 557/1994 (28%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 158 | 1.000 | Domainoid score | I4008 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG53524 | |
OrthoDB | 1 | 1.010 | - | - | D131191at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000051 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100045 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
7 | 6.830 |