DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6052 and Abca9

DIOPT Version :9

Sequence 1:NP_649002.3 Gene:CG6052 / 39971 FlyBaseID:FBgn0036747 Length:1725 Species:Drosophila melanogaster
Sequence 2:XP_038943368.1 Gene:Abca9 / 287788 RGDID:1305931 Length:1653 Species:Rattus norvegicus


Alignment Length:1894 Identity:458/1894 - (24%)
Similarity:793/1894 - (41%) Gaps:488/1894 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 MW----KNWILQWNQKMQIVFALVLPVLFLCLILVLRIIVLPEKMDEIR-YPTVSISDLNLYMRM 85
            ||    |||:.::..:.:.:...:|..|     |:|....|...:.::. .|.:|:.||      
  Rat    42 MWALLCKNWLRKFRMRRETLLEWLLSFL-----LILLAYQLSSNLHQVHDAPEMSMMDL------ 95

  Fly    86 VPLGNRILHENGSLNIPRNFLCYTPNNPINSAIVGATAIRLRLLGTRAYDTALHMEQDMVLHNFL 150
                .|:...|.|..|    :.:.|.:.....|:...|                      |..|:
  Rat    96 ----GRVDDFNDSNYI----IVFAPESETTHEIMNIAA----------------------LAPFM 130

  Fly   151 AG---VQFEDNENVNTNDAGYPLNLNYSL---------RFPSELRTMQGPIIDTWRTSRLFLSYD 203
            .|   |...|..:::      .||||||:         .|...|:...|..|...:..:     |
  Rat   131 KGRTIVACPDESSMS------ELNLNYSIDAVRVIFKDTFSYHLKFSWGQRIPKTKEHK-----D 184

  Fly   204 TSGS----RNRLDNDGGVPVGYIREGFLPIQHALTMSWLALASGVTDTGIPAIHLQRFPYRAYTY 264
            .:..    :|::..:..|   :..:||:..|.|:.       :|:.:  :...|        ...
  Rat   185 HTAPCEPFKNKMVCENSV---FWEKGFVAFQTAIN-------AGIIE--VTTNH--------SVM 229

  Fly   265 DQLLS---GLRQLLPFVI----------------LLSFIYPASTVTKYVTSEKELQLKEIMKLIG 310
            ::|:|   .:.::.||:.                ..||||..|.   .||.|:: .:..:|.::|
  Rat   230 EELMSVIGSVMKMQPFIAQGGVATDFFIFFCVISFSSFIYYLSV---NVTQERQ-SITTLMAMMG 290

  Fly   311 VHNWLHWVAWFVKSYIMLMLVVFLIMSLIMVKFYASVAVLTFSSWVPVLLFLHTYVVTSVCLCFM 375
            :.....|::|.: .|...:|||..:||||:    .|..|:..:.::.|.|....|.::.:.|.|:
  Rat   291 LRESAFWLSWGL-MYAGFILVVATLMSLIV----KSTQVVVLTGFMVVFLLFLLYGLSLITLSFL 350

  Fly   376 LAVLFSK---ASTASAVAAIFW--------------FLTYI-----PYSFGYYYYERLSLMSKLL 418
            ::||..|   ...|..:..:||              |:.:|     |::|       ::.|::|:
  Rat   351 MSVLLKKPFLTGLAVFLLTVFWGSLGFTALYKHLPAFMEWILCFLSPFAF-------INGMAQLI 408

  Fly   419 ISLIFSNSALGFGIHVIVMWEGTGEGITWRNMFHPVSTDDSL-TLFYIIMTMSFGSIMFISICLY 482
                    .|.:.::..|            |:..|.::...| |||.:::    .:::::::.||
  Rat   409 --------HLDYDVNSNV------------NLNSPNNSYLILATLFMLVL----DALLYLALALY 449

  Fly   483 VEQVFPGEYGVPRRWNFMCHKNYWRQ--------------YVPSLN-----IVPSFQTILHGSAK 528
            .:::...:||..|...|....:||.|              ..||||     :.|.||        
  Rat   450 FDKILLSKYGHQRSPLFFLKSSYWFQRRGADHVVLENEIDSAPSLNDSLEPVSPEFQ-------- 506

  Fly   529 AKSCRRAREVGIQLFNLQKNY----GKLKAVKGISLKMHRNEITVLLGHNGAGKTTTINMITGIV 589
                  .:| .|::.||:|.|    ||::|::|:...::..:||.||||:||||||.||.::|:.
  Rat   507 ------GKE-AIRIKNLRKEYTGKHGKVEALRGLGFDIYEGQITALLGHSGAGKTTLINTLSGLS 564

  Fly   590 KPTSGT-AIVNGYDIRTHLAKARESL-GICPQNNILFKEMSVRDHIIFFSKLKGIRGTKAVENEV 652
            .||:|: .|.|.....|..:.|...| |:|||:||.|..::|::::..|:|:|||. .:.||.||
  Rat   565 PPTTGSITIYNQTVSETEDSYAVPKLTGVCPQSNIQFGFLTVQENLRLFAKIKGIL-PQEVEQEV 628

  Fly   653 GKYMTMLKLQDKSYVAAKNLSGGMKRKLSLCCALCGNAKVVLCDEPSSGIDAAGRRSLWDLLQSE 717
            .:.:..|::::.....|:|||||.||||:...|:.|:.:|:|.|||::|:|...|..:|:||:..
  Rat   629 RQVLRDLEMENIQDTLAQNLSGGQKRKLTFGIAILGDPQVLLLDEPTAGLDPLSRHHIWNLLKER 693

  Fly   718 KDGRTILLTTHYMDEADVLGDRIAILSEGKLQCQGTSFYLKKRFGTGYLLVCIMQSGCDVGAVTQ 782
            :.||.|:.:|.:|||||:|.||...:|.|:|:|.|:|.:|||::|.||.|...:...||..::|.
  Rat   694 RSGRVIVFSTQFMDEADILADRKVFISNGRLRCAGSSLFLKKKWGIGYHLSLHLNETCDPESITS 758

  Fly   783 LIRKYVPPIKPERVLGTELTYRLPTEYSKKFAELLQDLDEKCAQLQLVGYGLSGATLEDVFMAVN 847
            |::|::|..:.......:|.|.||.|.:.||.:|.:||| :|:...:..|.:|..||.:||:   
  Rat   759 LVKKHIPDARLTAQSDEQLVYILPLERTNKFPDLYRDLD-RCSNHGIEDYDVSMTTLNEVFL--- 819

  Fly   848 TDKRVQGG--AEGPPV--------DGSIDFKELVFDSKTREKRRIRRCFMFWQALFLKKFYTTTR 902
               :::|.  ||.|..        ||:.|.:.||      |..|:         |.|....::..
  Rat   820 ---KLEGKSMAEEPDAGVCGRLLSDGAKDVESLV------ELERV---------LPLDSSGSSVS 866

  Fly   903 NYWLLGIQLVLPIAVMALTILNSRGG----------------------RIYYELPAMPISINQY- 944
            ...|...||.....|..|.:.|.|..                      ::|::..:..:|.:.| 
  Rat   867 GMALWRQQLCAVAKVRFLKLKNERRSLMTMLLLFGISFVPQLLEHLVYKVYHKSYSWGLSPSMYF 931

  Fly   945 SSAYVVLEDNTT-----DKTSSLADAYSKHLEHYARRCTLLRTGDLKFEDYILSHDVNHSRRIDF 1004
            .|...:.:|..|     :||.|..|.:...|........:...|....::..|            
  Rat   932 LSPGQLPQDPLTHLLVINKTGSSIDNFIHSLRQQGIALDVDALGTRNGKEEAL------------ 984

  Fly  1005 HFLAGLTV----SENNFIVWLNNKPLHTAPLTLNLLHNAL-----AIKLLGQDASTYVTNEPLPY 1060
             :...:||    .:..|.|..|.|.|:..|:..::|.|.|     :.:.:..|.||...:..|  
  Rat   985 -YNGAVTVLGDEKDLRFSVACNAKRLNCFPVLADILSNGLLGIFNSSERIQTDRSTVFEDHML-- 1046

  Fly  1061 SDDTRTLRLNKGQVLGAEISINLSLTMCFITAFYAIPIIRERETRAKLLQFLSGVDVCAYWTSHI 1125
                    ...|.:..|...|.::.:   :|.:.|:..|.:.:.:.....:.||:...|||....
  Rat  1047 --------YEYGFMSNAFFWIPVAAS---LTPYIAMGSISDHKKKVLSQLWTSGLYPSAYWCGQA 1100

  Fly  1126 VWDYLVF------------------VLSALSSILTIAAFKEIGYITPLDLSRYFYMLLIFGFPGI 1172
            :.|..::                  ::|.:.|:| |.....|||.:.|                |
  Rat  1101 LVDIPIYFLILLLMQIMDSVFSSEEIMSVIESLL-IQIPCSIGYASSL----------------I 1148

  Fly  1173 MLSYAASGCFSD--------------------AATGFTRISIINTLMGT---------GLFLMFM 1208
            .|:|..|..|.:                    .||.......:..|..|         |..|:|.
  Rat  1149 FLTYVISFVFRNGRKNSGIWSFFFLIVTIFFIVATDINEYGFLQLLFCTLLIPPFTLIGSLLIFS 1213

  Fly  1209 TLNFEAFQLKDVAE-KLAWYFRLSPHYSLASSTHSIHIGYNIRRGCSIGGIRKLPKQLR------ 1266
            .:::::......:| :|.:...|.|:      .|.:...:.:|  |....|||  |.||      
  Rat  1214 EVSYDSVDYLGSSESQLVFLALLIPY------LHFLLFFFILR--CLERYIRK--KTLRVDPVFR 1268

  Fly  1267 -----CRNVPICCDIPGYYGWRKPGVLVEITYMIMLGSTLFLLIVMHDAKVCNLIAEKLGNCFSK 1326
                 ||..|...|         ||...|...|                               :
  Rat  1269 ISPRSCRAFPNPED---------PGEEDEDVQM-------------------------------E 1293

  Fly  1327 RKRVEGG-TSIENDSVVAEQRVVREMINSGRKDVPLLVYKISKRYRSKLAVKAISFHVPHAECFG 1390
            |.|..|. |:.:.|    |:.|:  :.:..||:..:...:...:.:.|:|.:.|||.|...|..|
  Rat  1294 RVRTSGAMTTPQMD----EKPVI--IASCLRKEYTVKTKRCFSKTKKKIATRNISFCVKKGEVLG 1352

  Fly  1391 LLGINGAGKTSTFKMLAGDEKITSGEAYIDGTNISTHKVYRKIGYCPQFDALFEDLTGRETLNIY 1455
            |||.|||||::|..|:.||...|:|:.::.|::.|....:  :|||||.:.|:.:||.:|.|.:|
  Rat  1353 LLGHNGAGKSTTISMITGDTVPTAGQVFLKGSSGSAALGF--LGYCPQENVLWPNLTVKEHLEVY 1415

  Fly  1456 CLLRGVQRRHVTPICWGLAISFGFAKHMDKQTKHYSGGNRRKLSTAISVLGNPSVLYLDEPTSGM 1520
            ..::|::::........|..:......:....|..|.|.:|||...:|:||||||:.||||::||
  Rat  1416 AAVKGLRKKEAIVTITRLVNALKLQDQLKALVKTLSEGVKRKLCFVLSILGNPSVVLLDEPSTGM 1480

  Fly  1521 DPAARRQLWQII-GLIRTAGKSIVLTSHSMDECEALCSRLAIMVDGEFKCLGSVQSLKNQFSKGL 1584
            ||..::|:||.| .......:..:||:|.|.|.||:|.|:||||.|..:|:||:|.||::|.|..
  Rat  1481 DPEGQQQMWQAIRATFTNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDY 1545

  Fly  1585 ILKVKVKHKKKTFQRVVEDSSSSNDKKSISETDLKFLQMASVMESSQADRILKVNRFISKEIPDA 1649
            :|::|:|                               ..:::||        :|..|.:..|.|
  Rat  1546 LLEMKLK-------------------------------TPALVES--------LNTEILRLFPQA 1571

  Fly  1650 ELKEEYNGLITYYIP--HSKTLSKIFQLLETNSHKLNIEDYLIMQTRLEEIFLDFASKRDSSDIF 1712
            ..:|.|:.|:.|.:|  ..:.||:.|..||......::|:|.:.|:.||::||:.:.:::..|..
  Rat  1572 ARQERYSSLMVYKLPVEDVRPLSEAFFKLERLKENFDLEEYSLSQSTLEQVFLELSKEQELGDFD 1636

  Fly  1713 TKRIYSCSW 1721
            .:...|..|
  Rat  1637 EEGSSSVKW 1645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6052NP_649002.3 rim_protein 21..>54 CDD:130324 7/31 (23%)
rim_protein <149..1709 CDD:130324 433/1752 (25%)
Abca9XP_038943368.1 rim_protein <207..1630 CDD:130324 416/1657 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342296
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.750

Return to query results.
Submit another query.