DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6052 and wht-1

DIOPT Version :9

Sequence 1:NP_649002.3 Gene:CG6052 / 39971 FlyBaseID:FBgn0036747 Length:1725 Species:Drosophila melanogaster
Sequence 2:NP_001348731.1 Gene:wht-1 / 175859 WormBaseID:WBGene00015479 Length:671 Species:Caenorhabditis elegans


Alignment Length:813 Identity:154/813 - (18%)
Similarity:269/813 - (33%) Gaps:302/813 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   453 PVSTDDSLTLFYIIMTMSFGSIMFISIC------LYVEQVFPGEYGVPRRWNFMCHKNYWRQYVP 511
            |:||        :|:...|.::|...:.      |...|....:..||...|.     ||    .
 Worm     5 PIST--------LILDSLFSNMMLAEMMNDDQLELLKHQQTGIQPVVPEGCNL-----YW----S 52

  Fly   512 SLNI----------VPSFQTILHGSAKAKSCRRAREVGIQLFNLQKNYGKLKAVKGISLKMHRNE 566
            |||:          |..|:..:       ..||.:|:             |..|.|::   ...:
 Worm    53 SLNVTGPETKPTNFVDRFRNNM-------PKRRVKEI-------------LHNVSGMA---ESGK 94

  Fly   567 ITVLLGHNGAGKTTTINMITG---IVKPTSGTAIVNGYDIRTHLAKARESLGICPQNNILFKEMS 628
            :..:||.:||||||.:|::|.   ......|:.:::|.  |.:..|.||......|:::....|:
 Worm    95 LLAILGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGR--RANKWKIREMSAFVQQHDMFVGTMT 157

  Fly   629 VRDHIIFFSKLKGIRGTKAVEN-----EVGKYMTMLKLQDKSYVA------AKNLSGGMKRKLSL 682
            .|:|:.|.::|:  .|.:...:     .|.:.:|.:.|:..:...      .|.||.|.|::||.
 Worm   158 AREHLQFMARLR--MGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIPNQLKGLSCGEKKRLSF 220

  Fly   683 CCALCGNAKVVLCDEPSSGIDA--AGR-----RSLWDLLQSEKDGRTILLTTHYMDEADVLGDRI 740
            ...:....|::.||||:||:||  ||.     |||.|      :|.|:::|.|.           
 Worm   221 ASEILTCPKILFCDEPTSGLDAFMAGHVVQALRSLAD------NGMTVIITIHQ----------- 268

  Fly   741 AILSEGKLQCQGTSFYLKKRFGTGYLLVCIMQSGCDVGAVTQLIRKYVPPIKPERVLGTELTYRL 805
                        .|.::...|..    ||:|..|..:         |:.|......|..:..|..
 Worm   269 ------------PSSHVYSLFNN----VCLMACGRVI---------YLGPGDQAVPLFEKCGYPC 308

  Fly   806 PTEYS------KKFAELLQDLDEKCAQLQLVGYGLSGATLEDVFMAVNTDKRVQGGAEGPPVDGS 864
            |..|:      :..|.:..|.......:..:..|.....|....:|:....:::..:        
 Worm   309 PAYYNPADHLIRTLAVIDSDRATSMKTISKIRQGFLSTDLGQSVLAIGNANKLRAAS-------- 365

  Fly   865 IDFKELVFDSKTREKRRIRRCFM-------FWQ---ALFLKKFYTTTRNYWLLGIQLVLPIAVMA 919
                 .|..|.|.||   .:.|.       ||.   |||.:.:.|..|:..||.::|:..:....
 Worm   366 -----FVTGSDTSEK---TKTFFNQDYNASFWTQFLALFWRSWLTVIRDPNLLSVRLLQILITAF 422

  Fly   920 LTILNSRGGRIYYELPAMPISINQYSSAYVVLEDNTTDKTSSLADAYSKHLEHYARRCTLLRTGD 984
            :|      |.::::.|..|                                      .|::....
 Worm   423 IT------GIVFFQTPVTP--------------------------------------ATIISING 443

  Fly   985 LKFEDYILSHDVNHSRRIDFHFLAGLTVSENNFIVWLNNKPLHTAPLTLNLLHNALAIKLLGQDA 1049
            :.|         ||.|.:             ||::...|.|:.||.|.:.|..||..:       
 Worm   444 IMF---------NHIRNM-------------NFMLQFPNVPVITAELPIVLRENANGV------- 479

  Fly  1050 STYVTNEPLPYSDDTRTLRLNKGQVLGAEISINLSLTMCFITAFYAIPIIRERETRAKLLQFLSG 1114
              |.|:                        :..|:..:..:..:..:||:               
 Worm   480 --YRTS------------------------AYFLAKNIAELPQYIILPIL--------------- 503

  Fly  1115 VDVCAYWTSHI---VWDYLVFVLSALSSILTIAAFKEIGYITPLDLSRYFYMLLIFGFPGIMLSY 1176
            .:...||.|.:   .|:|      ..:|::||       .||.:.:|               :||
 Worm   504 YNTIVYWMSGLYPNFWNY------CFASLVTI-------LITNVAIS---------------ISY 540

  Fly  1177 AASGCF--SDAATGFTRISIINTLMGTGLFLMF 1207
            |.:..|  :|.|.....|.::..:...|.|:.|
 Worm   541 AVATIFANTDVAMTILPIFVVPIMAFGGFFITF 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6052NP_649002.3 rim_protein 21..>54 CDD:130324
rim_protein <149..1709 CDD:130324 154/813 (19%)
wht-1NP_001348731.1 3a01204 76..667 CDD:273361 136/718 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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