DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6052 and abca5

DIOPT Version :9

Sequence 1:NP_649002.3 Gene:CG6052 / 39971 FlyBaseID:FBgn0036747 Length:1725 Species:Drosophila melanogaster
Sequence 2:XP_005156458.1 Gene:abca5 / 100151075 ZFINID:ZDB-GENE-050517-5 Length:1673 Species:Danio rerio


Alignment Length:1821 Identity:487/1821 - (26%)
Similarity:856/1821 - (47%) Gaps:336/1821 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 GDWDKLKLLMWKNWILQWNQKMQIVFALVLPVLFLCLILVLRIIVLPEKMDEIRYPTVSISDLNL 81
            |.|.:.:.|::||.:::|..|.|.:..|:||:|.|.|::::..:     ...:.|.::|..:|. 
Zfish    29 GVWHQTRSLLYKNLLIKWRTKQQSLQELILPLLLLGLLILISTL-----NPHVSYGSISTKELE- 87

  Fly    82 YMRMVPLGNRILHENGSLNIPRNFLCYTPNNPINSAIVGATAIRLR------LLGTRA--YDTAL 138
            :.|.:|:..               |.|||.....:.|:...|..|.      :..|.|  .:.:|
Zfish    88 FERELPVKG---------------LGYTPITNFTNHIMEEVARELSMNEHLDMFSTEADLENASL 137

  Fly   139 HMEQDMVLHNFLAGVQFEDNENVNTNDAGYPLNLNYSLRFP-SELRTMQGPIIDTWRTSRLFLSY 202
            :..:..|      ||.|.|             :::|.|||| |:|..   |...|...:..:.:|
Zfish   138 YEPEGYV------GVVFLD-------------SMSYRLRFPYSQLPL---PSDFTESITSCYTNY 180

  Fly   203 DTSGSRNRLDNDGGVPVGYIREGFLPIQHALTMS----------WLALASGVTDTGIP-AIHLQR 256
            ....:.|           |...||:.:|..:..:          |..|.......|.| ::.:|:
Zfish   181 VNCRAAN-----------YWYSGFIRLQSVIDAAIIQMKTKRPVWNELKVRAVMMGHPGSVEVQK 234

  Fly   257 FPYRAYTYDQLLSGLRQLLPFVILLSFIYPASTVTKYVTSEKELQLKEIMKLIGVHNWLHWVAWF 321
            ||:             .|:...::|:|....|.:...|.:|||.:||:.|.::|:::...|::|.
Zfish   235 FPH-------------ALISIYLVLAFTPFVSFLIVNVAAEKEQRLKDTMGMMGLYDSAFWLSWG 286

  Fly   322 VKSYIMLMLVVFLIMSLIMVKFYASVAVLTFSSWVPVLLFLHTYVVTSVCLCFMLAVLFSKASTA 386
                 :|...:...||::|........:.:.|::..:.|.:..|.::|:...|||..||.|...|
Zfish   287 -----LLYAALVTTMSILMAVIATCTPLFSNSNFFVIFLLIFLYGISSIFFSFMLTPLFKKPKFA 346

  Fly   387 SAVAAIFWFLTYIPYSFGYYYYERLSLMSKLL---------ISLIFSNSALGFGIHVIVMWEGTG 442
            |.|.::   ||.:   ||.     |||.:.|:         :..:.|.||...||..:|..|..|
Zfish   347 STVGSM---LTVV---FGC-----LSLFTVLMRDFPQSAVWLLCLLSPSAFSIGIAQVVYLEAQG 400

  Fly   443 EGITWRNMFHPVSTDDSLTLFYIIMTMSF-GSIMFISICLYVEQVFPGEYGVPRRWNFMCHKNYW 506
            :|..:.      |..:.....|:.:.|.| ..|:::.:.:|::||.|||:|..|...:....:||
Zfish   401 DGAVFS------SLGNGPHALYVPLVMLFLDCILYLLLAIYLDQVLPGEFGTKRSVLYFLKPSYW 459

  Fly   507 ----RQYVP-------SLNIVPSFQTILHGSAKAKSCR-RAREVGIQLFNLQKNY----GKLKAV 555
                ::||.       .:|..|:    :..|.:|.|.. |.:|| |::.|::|.|    .|::|:
Zfish   460 SKRRKRYVEVSSVYEGEVNGTPA----IDESVEAVSPEFRGKEV-IRICNIRKIYREKDTKVEAL 519

  Fly   556 KGISLKMHRNEITVLLGHNGAGKTTTINMITGIVKPTSGTAIVNGYDIR--THLAKARESLGICP 618
            :|::..::..:||.||||:||||:|.:|::.||..||.|||.:.|..:.  ...|:.::.:||||
Zfish   520 RGLTFDIYEGQITALLGHSGAGKSTLMNILCGICPPTEGTATIYGSPVAEIAEGAEMKQLVGICP 584

  Fly   619 QNNILFKEMSVRDHIIFFSKLKGIRGTKAVENEVGKYMTMLKLQDKSYVAAKNLSGGMKRKLSLC 683
            |.||:|..::|.:|:..|:.:|||..:. ::.||.|.:..|.|:......|||||||.|||||:.
Zfish   585 QFNIIFDVLTVEEHLRIFAAIKGILPSD-IDGEVRKVLKDLDLEKIMDALAKNLSGGQKRKLSVG 648

  Fly   684 CALCGNAKVVLCDEPSSGIDAAGRRSLWDLLQSEKDGRTILLTTHYMDEADVLGDRIAILSEGKL 748
            .|:.|:.|::|.|||::|:|...|..:|.||:|.:.||..:|:||||||||:|.||.|::|:|:|
Zfish   649 IAILGDPKILLLDEPTAGMDPVSRHQVWSLLKSRRAGRVTVLSTHYMDEADILADRKAVISQGQL 713

  Fly   749 QCQGTSFYLKKRFGTGYLLVCIMQSGCDVGAVTQLIRKYVPPIKPERVLGTELTYRLPTEYSKKF 813
            :|.|:|.|||.:.|.||.|...:..||:|..:|.|::::||..:..|....|||:.||.|....|
Zfish   714 KCVGSSLYLKTKCGVGYHLRMSVTEGCEVEGITSLVKQHVPKAQLSRQQEAELTFTLPFESMDTF 778

  Fly   814 AELLQDLDEKC-AQLQLVGYGLSGATLEDVFMAVNTDKRVQGGAEGPPVDGSIDFKELVFD---- 873
            ..|..:||  | ..|.::.||:|..||||||:      |::..||....|.|:..:|.|.:    
Zfish   779 PGLFAELD--CRPDLGIINYGVSMTTLEDVFL------RLEAEAEVDQADYSVFNQEKVEEEGDA 835

  Fly   874 -SKTREKRRI------RRCFMFWQALFLKKFYTTTRNYWL--LGIQ----------LVLPIAVMA 919
             |.....:|:      |:..:...||:.::|.|..   ||  |.:|          .:..:.:.|
Zfish   836 SSMDDTDQRLLTFSDSRQDTVTGHALWRQQFSTVA---WLHMLNLQRERKPIIYNLTLFVVFLSA 897

  Fly   920 LTILNSRGGRIYYELPA---MPISI-------NQYSSAYVVLEDNTTDKTSSLADAYSKHLEHYA 974
            :.||:...|.|....|.   .||.:       ::|:::.:|  .|:||  |.|:.....      
Zfish   898 MLILSVATGNIQIHSPERLFSPIYLLRRNEAPHKYTTSLLV--QNSTD--SDLSGFIHN------ 952

  Fly   975 RRCTLLRTGDLKFEDYILSHDVNHSRRIDFHFLAGLTVSEN--------NFIVWLNNKPLHTAPL 1031
                 |::.|:|         |...:::|:...|.::.:.|        .:|:..|:..:|:.|:
Zfish   953 -----LQSQDIK---------VEMMKKLDYMSAAPVSAAINVTGPSKDFTYILAFNSTTVHSLPM 1003

  Fly  1032 TLNLLHNALAIKLLGQDASTYVT--NEPLPYSDDTRTLRLNKGQVLGAEISINLSLTMCFITAFY 1094
            .:|:|.|||   |.|.:.:.::.  ::|..|....:|     ...|....::.|.:....:.|::
Zfish  1004 AVNVLSNAL---LRGYNGTGHIRTWSKPFDYQIPDKT-----SYALVYIEAVILGMLAAGMPAYF 1060

  Fly  1095 AIPIIRERETRAKLLQFLSGVDVCAYWTSHIVWD--YLVFVLSALSSILTIAAFKEIGYITPLDL 1157
            |:...|:||.:.:....:||:...|||......|  :...:|:.::|  |:.||.....:|..::
Zfish  1061 AMDHTRDRELKCRSTLRISGLVPSAYWCGQAAIDVPFYYLILTCMTS--TLFAFHSTNLLTSHNI 1123

  Fly  1158 SRYFYMLLIFGFPGIMLSYAASGCFSDAATG---FTRISIINTLMGTGLFLMFMTLNFEAFQLKD 1219
            ......|:.|....::.:|..|..|....:.   |:.:|::..::...: :....:|..|...:.
Zfish  1124 LSVALCLIGFSPAMVLFTYCVSFMFVRVQSNRDFFSVVSMMVCVVSASI-VQLALVNESASMARL 1187

  Fly  1220 VAEKLAWYFRLSPHYSLASSTHSIHIGYNIRRGCSIGGIRKLPKQLRCRNVPICCDIP--GYYGW 1282
            :...|.::   ||.|.|              .||           |.|..|......|  ..:.|
Zfish  1188 LHNALCFF---SPLYPL--------------MGC-----------LNCITVATFVQSPHDDDFLW 1224

  Fly  1283 RKPGVLVEITY---MIMLGSTLFLLI-----VMHDAKVCNLIAEKLGNCFSKRKRVEGGTSIEND 1339
            :...:.|...|   :::|.|..:|.|     .|.:.::|.:.::    ..||.:|.......|::
Zfish  1225 KNLFISVVAPYIQCILLLVSLRWLEIRYGGKTMKNDQLCRISSQ----AKSKAQRNPEENMSEDE 1285

  Fly  1340 SVVAEQRVVREMIN---SGRKDVPLLVYKISKRYRS-----------KLAVKAISFHVPHAECFG 1390
            .|..|:..|:|.:.   ...|.| ::|..:.|:|:.           |:|.|.|||.|...|..|
Zfish  1286 DVQMEKARVKEAMTCQCCEEKPV-VVVSNLRKQYKGKREGFSLNKKRKVATKNISFCVRKGEVLG 1349

  Fly  1391 LLGINGAGKTSTFKMLAGDEKITSGEAYID--GTNIS-THKVYRKIGYCPQFDALFEDLTGRETL 1452
            |||.|||||::...||:||.:.|:|:..:.  ||:.. .......:|||||.:.|:..:|.:|.|
Zfish  1350 LLGPNGAGKSTIMHMLSGDTEATAGQILMGDYGTDFQPAENPLEHVGYCPQVNPLWPRITLQEHL 1414

  Fly  1453 NIYCLLRGVQRRHVTPICWGLAISFGFAKHMDKQTKHYSGGNRRKLSTAISVLGNPSVLYLDEPT 1517
            .||..::|:::|.:..|...:..:.....|:.||:|:.|.|.:|||..|:|:||||.::.||||:
Zfish  1415 EIYSAIKGLRQRDIPNIIKRVVSALELKDHLYKQSKNLSAGLKRKLCFALSMLGNPQIVLLDEPS 1479

  Fly  1518 SGMDPAARRQLWQII-GLIRTAGKSIVLTSHSMDECEALCSRLAIMVDGEFKCLGSVQSLKNQFS 1581
            :||||.:::::|:.| ...:...:..:||:|.|:|.||:|.|:||||.|:.:|:||:|.||.:|.
Zfish  1480 TGMDPKSKQRMWRAIRAAFKNKQRGALLTTHYMEEAEAVCDRVAIMVSGQLRCIGSIQHLKGKFG 1544

  Fly  1582 KGLILKVKVKHKKKTFQRVVEDSSSSNDKKSISETDLKFLQMASVMESSQADRILKVNRFISKEI 1646
            :|..|::.::.                        :|..||..:::..    .|||:       .
Zfish  1545 RGYSLEINLRE------------------------ELTGLQQVALLHK----EILKI-------F 1574

  Fly  1647 PDAELKEEYNGLITYYIPHS--KTLSKIFQLLETNSHKLNIEDYLIMQTRLEEIFLDFASKRDSS 1709
            |.|..::.:..::.|.||..  |:|:|.|..||:.....|.|:|...|:.||::|::||.::::.
Zfish  1575 PHAVRQDSFATMMVYKIPMEDVKSLAKSFAQLESAKQNFNFEEYNFSQSTLEQVFMEFAKEQENE 1639

  Fly  1710 D 1710
            :
Zfish  1640 E 1640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6052NP_649002.3 rim_protein 21..>54 CDD:130324 11/32 (34%)
rim_protein <149..1709 CDD:130324 457/1678 (27%)
abca5XP_005156458.1 ABC2_membrane_3 <165..395 CDD:289468 59/272 (22%)
CcmA 498..810 CDD:224054 132/321 (41%)
ABC_subfamily_A 500..723 CDD:213230 95/223 (43%)
ABC2_membrane_3 889..>1148 CDD:289468 59/292 (20%)
CcmA 1307..1634 CDD:224054 116/362 (32%)
ABC_subfamily_A 1309..1540 CDD:213230 85/230 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131191at2759
OrthoFinder 1 1.000 - - FOG0000051
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100045
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.820

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