DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps60 and Chmp5

DIOPT Version :9

Sequence 1:NP_001261994.1 Gene:Vps60 / 39964 FlyBaseID:FBgn0036740 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001020581.1 Gene:Chmp5 / 297995 RGDID:1305968 Length:219 Species:Rattus norvegicus


Alignment Length:222 Identity:140/222 - (63%)
Similarity:171/222 - (77%) Gaps:3/222 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNRLFGRGKPKEPGPSLNDCIAGVDARATNIEEKISNLEAELRKYREQMSKMREGPAKNSVKQKA 65
            |||.||:.|||.|.|||.|||..||:||.:|::|||.|:|||.||::|:.|||||||||.|||||
  Rat     1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKA 65

  Fly    66 LRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLKDTQATVAAMKDGVKQMKTEYKKINIDQIED 130
            |||||||:.||||.::|..||||||||||..||||||:.||.|||.|||:||..||::.||||||
  Rat    66 LRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKEVKIDQIED 130

  Fly   131 IQDDMADMFEQADEVQEALGRTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEAPSR 195
            :||.:.||.|.|:|:||||||:||.||:|:|||:|||||||||:..|:|:||||:...||..|. 
  Rat   131 LQDQLEDMMEDANEIQEALGRSYGTPELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPE- 194

  Fly   196 EPGADSIVPGKSTIETDEFGLPKIPTS 222
              |..:....|..:..||||||:||.|
  Rat   195 --GVPTDTKNKDGVLVDEFGLPQIPAS 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps60NP_001261994.1 Snf7 1..190 CDD:304451 126/188 (67%)
Chmp5NP_001020581.1 Snf7 1..201 CDD:419749 130/202 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21 13/19 (68%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 188..219 13/33 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341716
Domainoid 1 1.000 250 1.000 Domainoid score I2053
eggNOG 1 0.900 - - E1_KOG1655
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5757
Inparanoid 1 1.050 284 1.000 Inparanoid score I2789
OMA 1 1.010 - - QHG53573
OrthoDB 1 1.010 - - D1301560at2759
OrthoFinder 1 1.000 - - FOG0003367
OrthoInspector 1 1.000 - - oto95995
orthoMCL 1 0.900 - - OOG6_102352
Panther 1 1.100 - - LDO PTHR22761
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3249
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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