DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nedd4 and Ube3b

DIOPT Version :10

Sequence 1:NP_648993.1 Gene:Nedd4 / 39958 FlyBaseID:FBgn0259174 Length:1007 Species:Drosophila melanogaster
Sequence 2:NP_001137366.1 Gene:Ube3b / 687633 RGDID:1583074 Length:1070 Species:Rattus norvegicus


Alignment Length:427 Identity:135/427 - (31%)
Similarity:210/427 - (49%) Gaps:51/427 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   623 VPYSRDYKQKYEYFKSHIRK----------PTNVPNKFEIRIRRTSILEDSYRIISSVTKTDLLK 677
            :|:...:|.:...|::.:.|          .:..|:...|.|||:.:|||.|..:..:.: ..:|
  Rat   646 IPHVVPHKNRVLLFRNMVIKEKEKLGLVETSSASPHVTHITIRRSRMLEDGYEQLRQLPQ-HAMK 709

  Fly   678 TKLWVEFEG-----ETGLDYGGLAREWFYLLSKEMFNPYYGLFEYSAMDNYTLQINNGSGLCNEE 737
            ..:.|:|..     |.|:|..|:.:|:...:.|.:|:|...||:.::.|.....  :.:...:|.
  Rat   710 GAIRVKFVSDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSGDERLYP--SPTSYIHEN 772

  Fly   738 HLSYFKFIGRIAGMAVYHGKLLDAFFIRPFYKMML-------QKPIDLKDMESVDTEYYNSLMWI 795
            :|..|:|:|::.|.|||.|.::|..|...|...||       ...:|  ::.|:|:|:|.:|..|
  Rat   773 YLQLFEFVGKMLGKAVYEGIVVDVPFASFFLSQMLGHHHSVFYSSVD--ELPSLDSEFYKNLTSI 835

  Fly   796 KENDPRI--LELTFCLDEDVFGQKSQHELKPGGANIDVTNENKDEYIKLVIEWRFVARVKEQMSS 858
            |..|..:  |.||...||||.||...|||.|||..|.||:|||..||.|:..:|...::|.|.::
  Rat   836 KRYDGDVADLGLTLSYDEDVMGQLVCHELVPGGKTIPVTDENKISYIHLMAHFRMHTQIKNQTAA 900

  Fly   859 FLDGFGSIIPLNLIKIFDEHELELLMCGIQ-NIDVKDWRENTLYKGDYHMNHIIIQWFWRAVLS- 921
            .:.||.|||....|::|...||:.|:.|.. .||::|.:::|:|.|.:|.:|.:|.|.|..:.| 
  Rat   901 LISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIVWLWDILASD 965

  Fly   922 FSNEMRSRLLQFVTGTSRVPMNGFKEL--------------------YGSNGPQMFTIEKWGTPN 966
            |:...|:..|:|||..||.|:.||..|                    .||.....|||.|.....
  Rat   966 FTPGERAMFLKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREPGG 1030

  Fly   967 NFPRAHTCFNRLDLPPYEGYLQLKDKLIKAIEGSQGF 1003
            ..|.:.||||.|.||.|.....|::||..||..:.||
  Rat  1031 RLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTGF 1067

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nedd4NP_648993.1 C2_NEDD4_NEDD4L 71..204 CDD:175999
WW 248..277 CDD:459800
HUL4 <523..1003 CDD:227354 133/425 (31%)
Ube3bNP_001137366.1 HECTc 684..1068 CDD:238033 130/389 (33%)
Blue background indicates that the domain is not in the aligned region.

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