DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nedd4 and Ube3a

DIOPT Version :10

Sequence 1:NP_648993.1 Gene:Nedd4 / 39958 FlyBaseID:FBgn0259174 Length:1007 Species:Drosophila melanogaster
Sequence 2:NP_648452.1 Gene:Ube3a / 39266 FlyBaseID:FBgn0061469 Length:973 Species:Drosophila melanogaster


Alignment Length:468 Identity:132/468 - (28%)
Similarity:218/468 - (46%) Gaps:69/468 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   581 PLPEGWEE------RVHTDGRVFYIDHNTRTTQWEDPR-------------LSNPNIAGQAVPYS 626
            ||.|.:.|      ::|.|    |:.:.|...:.|...             :..|:....|:.|.
  Fly   527 PLEEFYNEALSENIQMHHD----YLSYKTLAMESEIGSGHANYFSFMLYAFILTPSTKVDALYYD 587

  Fly   627 ---RDYKQKYEYFKS------HIRKPTNVPNKFEIRIRRTSILEDSYRIISSVTKTDL--LKTKL 680
               |.|.::|....|      .:.:..|.....::.:||..::.|:...:..|..::.  ||.:|
  Fly   588 SRMRMYSERYSSLHSILNNIGQVGQEDNPRPDLKLTVRRDQLINDALIGLEMVAMSNPKDLKKQL 652

  Fly   681 WVEFEGETGLDYGGLAREWFYLLSKEMFNPYYGLF----EYSAMDNYTLQINNGSGLCNEEHLSY 741
            .|||.||.|:|.||:::|:|.|:.:|:|||.:|:|    |.:.|........||         :.
  Fly   653 VVEFVGEQGIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMWFNATPFENG---------AQ 708

  Fly   742 FKFIGRIAGMAVYHGKLLDAFFIRPFYKMMLQKPIDLKDMESVDTEYYNSLM----WIKENDPRI 802
            |..||.|.|:|:|:...|...|....|:.::.......|:.......|.||.    :..::...:
  Fly   709 FTLIGIIIGLAIYNNVTLAVNFPMVVYRKLIGYCGTFADLSDWSPALYKSLKSMLDYQGQDMEEV 773

  Fly   803 LELTFCLD-EDVFGQKSQHELKPGGANIDVTNENKDEYIKLVIEWRFVARVKEQMSSFLDGFGSI 866
            .|.||.:. .||||...||||.|.|.::.|...||:.::.|..::.....:::|.::|..||..:
  Fly   774 FEQTFKISYSDVFGDVVQHELVPNGQDVLVGQHNKELFVNLYSDFLLNTNIEQQFNAFRKGFEMV 838

  Fly   867 I---PLNLIKIFDEHELELLMCGIQNIDVKDWRENTLYKGDYHMNHIIIQWFWRAVLSFSNEMRS 928
            .   ||.|  :|...|:|:|:||.:..|..:...:|:|:|.|......||.||..|.:..:|.:.
  Fly   839 TDESPLKL--LFRPEEIEMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMPSEDKH 901

  Fly   929 RLLQFVTGTSRVPMNGFK---ELYGSNGPQMFTIEKWGTPNNFPRAHTCFNRLDLPPYEGYLQLK 990
            :||:|.||::|||:.|.|   .|...:||.         .:..|.:|||||.|.||.|....:|:
  Fly   902 KLLEFTTGSARVPVGGLKCLRLLITRHGPD---------SDRLPTSHTCFNVLLLPEYSSREKLE 957

  Fly   991 DKLIKAIEGSQGF 1003
            ::|:|||..|:||
  Fly   958 ERLMKAINYSKGF 970

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nedd4NP_648993.1 C2_NEDD4_NEDD4L 71..204 CDD:175999
WW 248..277 CDD:459800
HUL4 <523..1003 CDD:227354 130/466 (28%)
Ube3aNP_648452.1 AZUL 40..94 CDD:465173
HECTc 620..971 CDD:238033 115/371 (31%)
Blue background indicates that the domain is not in the aligned region.

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