DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nedd4 and Arel1

DIOPT Version :9

Sequence 1:NP_648993.1 Gene:Nedd4 / 39958 FlyBaseID:FBgn0259174 Length:1007 Species:Drosophila melanogaster
Sequence 2:NP_001100214.1 Gene:Arel1 / 299197 RGDID:1307597 Length:823 Species:Rattus norvegicus


Alignment Length:867 Identity:207/867 - (23%)
Similarity:343/867 - (39%) Gaps:198/867 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 EERQDANGRTY-------YVNHTARTTQWD----------------------------RPTVLNS 282
            |:|:....||.       |::..:....||                            ||..|..
  Rat    36 EDRERRGDRTIYDYVRGNYLDPRSCKVSWDWKDPYEVGHSMAFRVHLFYKNGQPFPAHRPVGLRV 100

  Fly   283 HSSQ--------STDDQLASDFQRRFHISVDDTESGRSADSISHNSIEDNNNAAGLAYTP----- 334
            |.|.        .|.:.|.........::....::||...::....:       .:||:|     
  Rat   101 HISHVELAVEIPVTQEVLQEPNSNVVKVAFTVRKAGRYEITVKLGGL-------NVAYSPYYKIF 158

  Fly   335 ----------------KTAATSSAPPNT-----------PTNNNGILAQIAMQYRAEEDQDPTVD 372
                            .|...:...|:|           ||||       :|..|.|.:      
  Rat   159 QPGMVVPSKTKIVCHFSTLVLTCGQPHTLQIVPRDEYDNPTNN-------SMSLREEHN------ 210

  Fly   373 HTSFVYNSLRHPVAHRQPEISATSLQNDLRPVREAPGVPDIAITNPFTRRAAGNMAGGAGWQ-QE 436
                 |:...|.:..::.|.|..|.:..:...|:.     ..:....|..:.|.......:| |.
  Rat   211 -----YSLSIHELGPQEEENSEVSFEKSVTSNRQT-----CQVFLRLTLHSRGCFHACISYQNQP 265

  Fly   437 RRRQQMQLHIQQHQQRQQQQQQ----------NRILLDVDHRQQEPQHRGQRH--QQQHRPSNED 489
            ....:..:.:....::...::.          ...|.:.:.....|.|....|  ..|.|||.. 
  Rat   266 INNGEFDIIVLSENEKNIVERNVSTSGVSIYFEAYLYNANSYSSAPWHLPPMHMSSSQRRPSTA- 329

  Fly   490 TDHTDSHNPSDISAPSTRRNSEEDNAAVPPMEQNTGGEE---EPLPPR-WSMQVAPNGRTFFI-- 548
            .:..:..:||:...|...:..::....|.|.:.:.  :|   :.:|.| ::.:|.|..:..::  
  Rat   330 LEEEEEDSPSECHTPEKVKKPKKVYCYVSPKQFSV--KEFYLKIIPWRLYTFRVCPGTKFSYLGP 392

  Fly   549 DHASRRTTWIDPRNGRASPMPNQTRRVEDDLGPLPE-GWEERVHTDGRVFYIDHNTRTTQWEDPR 612
            |...:..|.:                |:|.:.|..| ..:||            |.....:  .|
  Rat   393 DPVHKLLTLV----------------VDDGIQPPVELSCKER------------NILAATF--IR 427

  Fly   613 LSNPNIAGQAVPYSRDYKQKYEYFKS-----HIRKPTNVPNKFEIRIRRTSILEDSYRIISSVTK 672
            ..:.||.|     |..::.|..:|:.     |:::|   .:|..:::.|.::||.|.:...:.:.
  Rat   428 SLHKNIGG-----SETFQDKVNFFQRELRQVHMKRP---HSKVTLKVSRHALLESSLKATRNFSI 484

  Fly   673 TDLLKTKLWVEFEGETGLDYGGLAREWFYLLSKEMFNPYYGLFEYSAMDNYTLQINNGSGLCNEE 737
            :|..| ...|.|:.|..||:||..||||.|:.|.:|:....||...:.:|..|...|.:   ...
  Rat   485 SDWSK-NFEVVFQDEEALDWGGPRREWFELICKALFDTTSQLFTRFSDNNQALVHPNPN---RPA 545

  Fly   738 H--LSYFKFIGRIAGMAVYHGKLLDAF-------FIRPFYKMMLQKPIDLKDMESVDTEYYNS-L 792
            |  |..::|.||:.|..:|...|..|:       |.|.|...::...:..|..|:.|.|:|.| :
  Rat   546 HLRLKMYEFAGRLVGKCLYESSLGGAYKQLVRARFTRSFLAQIIGLRMHYKYFETDDPEFYKSKV 610

  Fly   793 MWIKENDPRILELTFCLDEDVFGQKSQ----HELKPGGANIDVTNENKDEYIKLVIEWRFVARVK 853
            .:|..||...:||.|.  |:.:.:..|    .||..|||...|||.||..|:.|:.::|..::||
  Rat   611 CFILNNDMSEMELVFA--EEKYNKSGQLDKIVELMTGGAQTPVTNANKTFYLNLLAQYRLASQVK 673

  Fly   854 EQMSSFLDGFGSIIPLNLIKIFDEHELELLMCGIQNIDVKDWREN-TLYKGDYHMNHIIIQWFWR 917
            |::..||.|...::|.||:.||||:||||||||..:|.|.|::.: .:..|.:|....:::|||.
  Rat   674 EEVEHFLKGLNELVPENLLAIFDENELELLMCGTGDISVSDFKAHAVVVGGSWHFREKVMRWFWT 738

  Fly   918 AVLSFSNEMRSRLLQFVTGTSRVPMNGFKELYGSNGPQMFTIEKWGTPNNFPRAHTCFNRLDLPP 982
            .|.|.:.|..:|||||.||:|::|..||..|..|     |.|....|.:..|.||||||:|.||.
  Rat   739 VVSSLTQEELARLLQFTTGSSQLPPGGFAALCPS-----FQIIAAPTHSTLPTAHTCFNQLCLPT 798

  Fly   983 YEGYLQLKDKLIKAI-EGSQGF 1003
            |:.|.::...|..|| ||.:||
  Rat   799 YDSYEEVHRMLQLAISEGCEGF 820

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nedd4NP_648993.1 C2_NEDD4_NEDD4L 71..204 CDD:175999
WW 248..277 CDD:278809 7/58 (12%)
WW 531..560 CDD:278809 6/31 (19%)
WW 581..613 CDD:197736 5/32 (16%)
HECTc 650..1003 CDD:238033 129/368 (35%)
HECTc 674..1003 CDD:214523 125/344 (36%)
Arel1NP_001100214.1 Filamin 56..154 CDD:395505 13/104 (13%)
HECTc 486..820 CDD:214523 125/344 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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