DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nedd4 and pub2

DIOPT Version :9

Sequence 1:NP_648993.1 Gene:Nedd4 / 39958 FlyBaseID:FBgn0259174 Length:1007 Species:Drosophila melanogaster
Sequence 2:NP_593926.1 Gene:pub2 / 2542432 PomBaseID:SPAC1805.15c Length:671 Species:Schizosaccharomyces pombe


Alignment Length:442 Identity:191/442 - (43%)
Similarity:288/442 - (65%) Gaps:19/442 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   573 RRVEDDLGPLPEGWEERVHTDGRVFYIDHNTRTTQWEDPRLSNPNIAGQAVPYSRD--------Y 629
            ::|..:.||||.|||.|:..|..|:::||:|:||.|.|||  :..:|..:|..:.|        |
pombe   235 QQVAVEKGPLPAGWEMRLSEDYHVYFVDHSTKTTTWSDPR--DNVVASDSVSENTDSIQQINDEY 297

  Fly   630 KQKYEYFKSHIRKPTNVPN--KFEIRIRRTSILEDSYRIISSVTKTDLLKTKLWVEFEGETGLDY 692
            ::|..|...   :|....|  :.::::.|.:..||:|.|||.::.:| :|.||.:.|..|.||||
pombe   298 QRKIAYMYD---RPEMAVNDAQLQLKVSRATTFEDAYDIISKLSVSD-MKKKLLIRFRNEDGLDY 358

  Fly   693 GGLAREWFYLLSKEMFNPYYGLFEYSAMDNYTLQINNGSGLCNEEHLSYFKFIGRIAGMAVYHGK 757
            ||::||:||:||..:|||.|.||||:..|||.|||:..|.: |.:..|||:|:||:.|:|:||.:
pombe   359 GGVSREFFYILSHAIFNPGYSLFEYATDDNYGLQISPLSSV-NPDFRSYFRFVGRVMGLAIYHRR 422

  Fly   758 LLDAFFIRPFYKMMLQKPIDLKDMESVDTEYYNSLMWIKEND-PRILELTFCLDEDVFGQKSQHE 821
            .||..|:.||||.:||||:.|:|::.||..||.||.|||.|| ...|.|.|.::|:.||:....:
pombe   423 YLDVQFVLPFYKRILQKPLCLEDVKDVDEVYYESLKWIKNNDVDESLCLNFSVEENRFGESVTVD 487

  Fly   822 LKPGGANIDVTNENKDEYIKLVIEWRFVARVKEQMSSFLDGFGSIIPLNLIKIFDEHELELLMCG 886
            |.|.|.||.|.|:||..|:|.:.|.:.|...:||.::...|...:||.::::||:|:||:.|:.|
pombe   488 LIPNGRNIAVNNQNKMNYLKALTEHKLVTSTEEQFNALKGGLNELIPDSVLQIFNENELDTLLNG 552

  Fly   887 IQNIDVKDWRENTLYKGDYHMNHIIIQWFWRAVLSFSNEMRSRLLQFVTGTSRVPMNGFKELYGS 951
            .::|||:||:..|.|:.....:.|:| |||..:..:|.|.:::||||.|||||:|::|||:::||
pombe   553 KRDIDVQDWKRFTDYRSYTETDDIVI-WFWELLSEWSPEKKAKLLQFATGTSRLPLSGFKDMHGS 616

  Fly   952 NGPQMFTIEKWGTPNNFPRAHTCFNRLDLPPYEGYLQLKDKLIKAIEGSQGF 1003
            :||:.|||||.|..:..|:|||||||||:|||....:|:.||..||:.:.||
pombe   617 DGPRKFTIEKVGHISQLPKAHTCFNRLDIPPYNSKEELEQKLTIAIQETAGF 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nedd4NP_648993.1 C2_NEDD4_NEDD4L 71..204 CDD:175999
WW 248..277 CDD:278809
WW 531..560 CDD:278809
WW 581..613 CDD:197736 17/31 (55%)
HECTc 650..1003 CDD:238033 161/353 (46%)
HECTc 674..1003 CDD:214523 154/329 (47%)
pub2NP_593926.1 HUL4 1..671 CDD:227354 191/442 (43%)
C2_Smurf-like 7..128 CDD:176028
WW 243..275 CDD:197736 18/33 (55%)
HECTc 317..669 CDD:238033 163/355 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 359 1.000 Domainoid score I158
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000080
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11254
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.910

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