DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nedd4 and herc6

DIOPT Version :10

Sequence 1:NP_648993.1 Gene:Nedd4 / 39958 FlyBaseID:FBgn0259174 Length:1007 Species:Drosophila melanogaster
Sequence 2:XP_031759089.1 Gene:herc6 / 100487734 XenbaseID:XB-GENE-968556 Length:1030 Species:Xenopus tropicalis


Alignment Length:915 Identity:185/915 - (20%)
Similarity:318/915 - (34%) Gaps:266/915 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 HAFIRETREQSEPSSGNSDGEWEHVEATNAGETSAQPHPFPTGGHDALPAGWEERQDANGRTY-- 263
            :.|..:|..|...:|||.....:.:| ..||:.|                     |.|.||.:  
 Frog   267 YTFGDDTHGQLGQNSGNQTSVPQKIE-DYAGQVS---------------------QVACGRYHTL
 309

  Fly   264 -YVNHTARTTQWDRPTVLNSHSSQSTDD-QLASDFQRRFHISVDDTESGRSADSISHNSIED--- 323
             ||....|...:.:.::....:::.:|: :|.|:|         |..|     .:..|.:.|   
 Frog   310 LYVFSCNRIVSFGKGSLRPQDNTECSDEAELPSEF---------DISS-----LVPTNDLRDVYV 360

  Fly   324 ----NNNAAGLAY-------TPKTAATSSAPP----NTPTNNNGILAQIAMQYRAEEDQ------ 367
                ..|..|.|.       |.:|..:.:..|    :.||....:.||..    :||.|      
 Frog   361 KWIFAGNNVGFAVPFSQQEATKRTLLSDTFKPILRLDLPTIKKWMKAQTG----SEEYQIAKREI 421

  Fly   368 -----DPTVDHTSFVYNSLRHPVA--------------------HRQPEISATSLQNDLRP---- 403
                 .|......||..|..:..:                    .|..:|..:|::|||.|    
 Frog   422 CTIFSSPACFTAGFVNRSSSNTSSASSIVDLGVASKLFTELIKDRRISDIICSSIRNDLIPELES 486

  Fly   404 -------------VREAPGVPDIAITNPFT---RRAAGNMAG------GAGWQQERRRQQMQLHI 446
                         :.|.|.:.|::|.....   .:|..||..      |..|.          |:
 Frog   487 LPLLYEAFAIFLLLPECPLLHDLSICLSVVVALAKAINNMGESSLKILGTLWS----------HM 541

  Fly   447 QQHQQRQQ-QQQQNRILLDVDHRQQEPQHRGQRHQQQHRPSNEDTDHTDSHNPSDISAPSTRRNS 510
            |.....:| |..:..::|.:...|.||   |.:...|                   ......:.:
 Frog   542 QASSMTKQIQLLKIAVILSIQGIQAEP---GTKDLLQ-------------------MLKKLYKAN 584

  Fly   511 EEDNAAVPPMEQNTGGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGRASPMPNQTRRV 575
            .:.|..||   .|.....|..|    :.:.|                :|..|.|.          
 Frog   585 LKGNCIVP---INAFCMNELCP----LIILP----------------LDVNNWRL---------- 616

  Fly   576 EDDLGPLPEGWEERVHTDGR-----------VFYIDHNTRTTQWEDPRLSNPNIAGQAVPYSRDY 629
                      |:.:...|..           ||......:....:..|..|          :..:
 Frog   617 ----------WQSQPEPDENAFPAIYCRFPFVFNFPTKVQALHLDSMRKRN----------NEKF 661

  Fly   630 KQKYEYFKSHIRKPTNVPN--KFEIRIRRTSILEDSYRIISSVTKTDLLKTKLWVEFEGETGLDY 692
            :.:.:..::.::..:::||  ...:.:||..:|||:...:|.|...: ||..|.|||:||:..|.
 Frog   662 QAQEQLVRNRLQGISDLPNIPLLHLILRRGHLLEDTLHKLSIVEDPN-LKKDLLVEFQGESTTDS 725

  Fly   693 GGLAREWFYLLSKEMFNPYYGLFEYSAMDNYTLQINNGSGLCNE-------------EHLSYFKF 744
            ..:.:|:|.:|.:.|.||.||:|.                 |::             |...||.|
 Frog   726 AAVTKEFFLVLLESMVNPDYGMFS-----------------CSDPLLPIWFPSTPLVEKKKYFYF 773

  Fly   745 IGRIAGMAVYHGKLLDAFFIRPFYKMMLQKPIDLKDMESVDTEYYNSLMWIKENDPRI---LELT 806
             |.|.|:|||:..::...|....:|.:|.|...|:|::.:......::..:.:.:..:   :|..
 Frog   774 -GIICGLAVYNQIVIYLPFPLALFKKLLGKKATLEDLKELQPTMGRTMKDLLDAESTVVESMETY 837

  Fly   807 FCLDEDVFGQKSQHELKPGGANIDVTNENKDEYIKLVIEWRFVARVKEQMSSFLDGFGSIIPLNL 871
            ||...|    ....:|.|.|.::.|.|.||.:::...|::.|...|......|..||..:....:
 Frog   838 FCFSWD----NKSIDLIPNGGSVQVNNLNKKDFVNKCIDYIFNTSVMVPFEEFKRGFYKVCDKEI 898

  Fly   872 IKIFDEHELELLMCGIQNIDVKDWRENTLYKGDYHMNHIIIQWFWRAVLSFSNEMRSRLLQFVTG 936
            |..|...||..|:.|....|...:.:.|:|.|.:..:|..|:.||:...:.|...:...|.|:||
 Frog   899 ISFFQPDELMALVAGTTEYDWNIFEKTTMYLGKFTPDHPTIRMFWKVFHALSLVNKKGFLMFLTG 963

  Fly   937 TSRVPMNGFKELYGSNGPQM-FTIEKWGTPN--NFPRAHTCFNRLDLPPYEGYLQLKDKLIKAIE 998
            ..::|      ::...|..: ..|..:|.|:  :.|.|.|||:.|.||.|.....||.||:.||.
 Frog   964 NDKLP------IFTRGGDNIRMKISSFGVPDETHLPEAQTCFHMLFLPEYSNIKSLKQKLMLAIA 1022

  Fly   999 GSQGF 1003
            .::|:
 Frog  1023 HNKGY 1027

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nedd4NP_648993.1 C2_NEDD4_NEDD4L 71..204 CDD:175999 0/2 (0%)
WW 248..277 CDD:459800 7/31 (23%)
HUL4 <523..1003 CDD:227354 113/511 (22%)
herc6XP_031759089.1 ATS1 1..309 CDD:444065 14/63 (22%)
HUL4 324..1021 CDD:227354 165/828 (20%)
HECTc 684..1028 CDD:238033 99/373 (27%)

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