DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edc3 and Edc3

DIOPT Version :9

Sequence 1:NP_648992.1 Gene:Edc3 / 39957 FlyBaseID:FBgn0036735 Length:680 Species:Drosophila melanogaster
Sequence 2:XP_036010982.1 Gene:Edc3 / 353190 MGIID:2142951 Length:517 Species:Mus musculus


Alignment Length:673 Identity:182/673 - (27%)
Similarity:281/673 - (41%) Gaps:208/673 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DWIGCAVSIACDEVLGVFQGLIKQIS--AEEITIVRAFRNG----VPLRKQNAEVVLKCTDIRSI 65
            ||:|..|||.|.:.|||:||.:..:.  ::.|::.|.|.||    ||      ||..:..||..:
Mouse     4 DWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVP------EVTFRAGDITEL 62

  Fly    66 DLIEPAKQDLDGHTAPPPVVNKPTPVKLPHFSNILGKQQQLQLQQQQQQLQLQQQQKQQFQEQER 130
            .::|          .|.|                 |..||:                        
Mouse    63 KILE----------IPGP-----------------GDNQQV------------------------ 76

  Fly   131 EQDLPSTPRSRANDNGRVAAGGASSSSGPRG-NFNSALSDKMHQLKLIETNGSNGTLRTPQTSRA 194
             .||..|                  ..||.| .:..::|.          ||:...::.|.:|  
Mouse    77 -GDLHQT------------------ELGPSGVGYQMSISQ----------NGTGKVVKKPASS-- 110

  Fly   195 SSAQQQPQISTTPNSVAAFFGNMIPPKVEVKLGSYVSNTRESYCSSSGDSGEATGLSLGSSKPID 259
                     |:.|.|        ||.:.:||......:.::..||.|........||...|    
Mouse   111 ---------SSAPQS--------IPKRTDVKSQDVAISPQQQQCSKSYVDRHMESLSQSKS---- 154

  Fly   260 IVSNGDGFYKQTAASSYGNTNGNVRRNGNANNNGNGTGNGSYTNGNG--NGNGKNKRNRVRRESS 322
                                   .||..|:.::.:...|.:....:|  ||..|||.:.      
Mouse   155 -----------------------FRRRHNSWSSSSRHPNQATPKKSGLKNGQMKNKDDE------ 190

  Fly   323 MRQQQVQLTFGSEADDPLIHEDFDFEGNLALFDKQAIWDDIESTTQKPDVVRHIVNNHHHKPEQK 387
                    .||.:.:: |...|||||||||||||.|::::|::..::.......|.|  .:| .:
Mouse   191 --------CFGDDIEE-LPDTDFDFEGNLALFDKAAVFEEIDTYERRSGSRSRGVPN--ERP-AR 243

  Fly   388 YRHDENILASKPLQLRQIESMFGGSQDFVTDDGLIIPTIPAYVRNKIEISADKAGLSLQRQIDIL 452
            ||||||||.|:|:..|:|......|::|.||.||::|::...:..|:...|:|.||:|:|::::.
Mouse   244 YRHDENILESEPIVYRRITVPHSVSKEFCTDSGLVVPSVSYELHKKLLSVAEKHGLTLERRLEMT 308

  Fly   453 ARGASDLAITLLGGARRLTPANNHQWPKIAIICDGGKNMRTINIGAATGRQLASHGLTVLLYVEQ 517
            ...||.:|:|||||..||.|.|.||.|.:|::|  |.:::... |.:.||.||:|.:.|:|::..
Mouse   309 GVCASQMALTLLGGPNRLNPKNVHQRPTVALLC--GPHVKGAQ-GISCGRHLANHDVQVILFLPN 370

  Fly   518 -AKLLEQNSSSPEISLFKATDNVIVHSVDALPTP--DLVILSTN---TANLSD-----AIRKWLS 571
             .|:||  |.:.|:|||..|....|.|:..||..  ||||...:   .|.|.|     |...|.:
Mouse   371 FVKMLE--SITNELSLFSKTQGQQVSSLRDLPASPVDLVINCLDCPENAFLRDQPWYKAAVAWAN 433

  Fly   572 VNRASVLAIDPPPCGINEVAIKYSILPILPLNGISTATTSSSSSAAATPTPIASTSAAASATKSA 636
            .|||.||:||||   ::||.           .||.    :..|.|...|.|:.            
Mouse   434 QNRAPVLSIDPP---VHEVE-----------QGID----AKWSLALGLPLPLG------------ 468

  Fly   637 ASTNNCGKLYLCNLGIPDKFYRD 659
               .:.|::|||::|||.:.:::
Mouse   469 ---EHAGRVYLCDIGIPQQVFQE 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edc3NP_648992.1 LSm16_N 5..69 CDD:212484 23/67 (34%)
FDF 343..>397 CDD:286601 26/53 (49%)
YjeF_N 453..583 CDD:294225 55/140 (39%)
Edc3XP_036010982.1 LSm16_N 4..66 CDD:212484 23/67 (34%)
Edc3_linker 102..197 CDD:406897 12/95 (13%)
FDF 200..300 CDD:370547 17/99 (17%)
YjeF_N 302..455 CDD:397779 54/154 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846157
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0062
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H11827
Inparanoid 1 1.050 233 1.000 Inparanoid score I3413
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006369
OrthoInspector 1 1.000 - - oto91917
orthoMCL 1 0.900 - - OOG6_106564
Panther 1 1.100 - - LDO PTHR13612
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6031
SonicParanoid 1 1.000 - - X6088
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.780

Return to query results.
Submit another query.