DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edc3 and Naxe

DIOPT Version :9

Sequence 1:NP_648992.1 Gene:Edc3 / 39957 FlyBaseID:FBgn0036735 Length:680 Species:Drosophila melanogaster
Sequence 2:XP_006232671.1 Gene:Naxe / 295229 RGDID:1304699 Length:282 Species:Rattus norvegicus


Alignment Length:91 Identity:23/91 - (25%)
Similarity:41/91 - (45%) Gaps:11/91 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   558 NTANLSDAIRKWLSVNRASVLAIDPPPCGINEVAIKYSILPILPLNGISTATTSSSSSAAATPTP 622
            ::..::.|..|:||...|.  |:|...  .||  .::|:..::.|.|:|.||    :.|.|.| |
  Rat    42 SSETMASAAVKYLSQEEAQ--AVDEEL--FNE--YQFSVDQLMELAGLSCAT----AIAKAYP-P 95

  Fly   623 IASTSAAASATKSAASTNNCGKLYLC 648
            .:.:.:..:........||.|...:|
  Rat    96 TSMSKSPPTVLVICGPGNNGGDGLVC 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edc3NP_648992.1 LSm16_N 5..69 CDD:212484
FDF 343..>397 CDD:286601
YjeF_N 453..583 CDD:294225 7/24 (29%)
NaxeXP_006232671.1 PLN03049 50..>281 CDD:215550 22/83 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0062
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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