DRSC/TRiP Functional Genomics Resources

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Protein Alignment Edc3 and Y18D10A.3

DIOPT Version :10

Sequence 1:NP_648992.1 Gene:Edc3 / 39957 FlyBaseID:FBgn0036735 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_001364575.1 Gene:Y18D10A.3 / 189472 WormBaseID:WBGene00012476 Length:235 Species:Caenorhabditis elegans


Alignment Length:215 Identity:45/215 - (20%)
Similarity:76/215 - (35%) Gaps:75/215 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   428 AYVRNKIEISAD-----KAGLSLQRQIDILARGASDLAITLLGGARRLTPANNHQWPK--IAIIC 485
            :::..|:....|     |.|..:::.:::....|:. ||..             .:||  :|::|
 Worm    11 SFIGQKLAAQIDEQLFTKYGFKVEQLMELAGLAAAQ-AIAA-------------HYPKSNVAVLC 61

  Fly   486 DGGKNMRTINIGAATGRQLASHGLTVLLYVEQAKLLEQNSSSPEISLFKATDNVIVHS-VDALPT 549
            ..|.|       ...|...|.|             |:|...:|.|...|.:.|.::.| |....|
 Worm    62 GPGNN-------GGDGFVCARH-------------LQQFGFTPSIVYPKESRNELMKSLVVQCET 106

  Fly   550 PDLVILSTNTANLS------DAI-------------RKWLSVNRAS---VLAIDPP--------- 583
            ..:.|.:|...||.      ||:             .:.|...|||   |.:||.|         
 Worm   107 SSIPITATLPTNLQAFPLIVDALFGFSFHPPTREPFTEMLKTVRASGIHVFSIDVPSGWDVELGA 171

  Fly   584 PCGINEVAI-KYSILPI-LP 601
            |.|.::..| .:|::.: ||
 Worm   172 PSGNDDDVIHPHSVISLTLP 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edc3NP_648992.1 LSm16_N 5..69 CDD:212484
FDF 343..>397 CDD:430668
YjeF_N 453..583 CDD:444831 34/154 (22%)
Y18D10A.3NP_001364575.1 PLN03049 3..>233 CDD:215550 45/215 (21%)
Blue background indicates that the domain is not in the aligned region.

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