DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edc3 and Edc3

DIOPT Version :10

Sequence 1:NP_648992.1 Gene:Edc3 / 39957 FlyBaseID:FBgn0036735 Length:680 Species:Drosophila melanogaster
Sequence 2:XP_312817.5 Gene:Edc3 / 1273803 VectorBaseID:AGAMI1_002216 Length:547 Species:Anopheles gambiae


Alignment Length:698 Identity:258/698 - (36%)
Similarity:341/698 - (48%) Gaps:184/698 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 WIGCAVSIACDEVLGVFQGLIKQISAEEITIVRAFRNGVPLRKQNAEVVLKCTDIRSIDLIEPAK 72
            |:|.:|||.|...:|:|||:||:::...:.|.:|.|||:||:|.|.||.|...||..:|||..:.
Mosquito     5 WVGKSVSIHCRNDIGIFQGIIKRVTPSVVVITKAVRNGIPLKKNNVEVTLSAVDIAKLDLISCSN 69

  Fly    73 QDLDGHTAPPPVVNKPTPVKLPHFSNILGKQQQ---LQL-----QQQQQQLQLQQQQKQQFQEQE 129
                    .|.:.:||......:...:.....|   |:|     |.||||   ||||:||||   
Mosquito    70 --------VPSIPSKPVATVAANSGMVTSLDDQYDGLKLMNNGKQHQQQQ---QQQQQQQFQ--- 120

  Fly   130 REQDLPSTPRSRANDNGRVAAGGASSSSGPRGNFNSALSDKMHQLKLIETNGSNGTLRTPQTSRA 194
                                                              ||:....:.     |
Mosquito   121 --------------------------------------------------NGTGSAFKL-----A 130

  Fly   195 SSAQQQPQISTTPNSVAAFFGNMIPPKVEVKLGSYVSNTRESYCSSSGDSGEATGLSLGSSKPID 259
            :.:..|.:.:.|||       |...|.|                        ..|.|..||.|||
Mosquito   131 TKSPAQSKYANTPN-------NTTQPVV------------------------GQGKSTASSHPID 164

  Fly   260 IVSNGDGFYKQTAASSYGNTNGNVRRNGNANNNGNGTG-----------NGSYTNGNGNGNGKNK 313
            | :||..  :...|||:  |.|.|      .:.|||..           :||.....||||||..
Mosquito   165 I-NNGSA--QNHMASSF--TGGFV------GSFGNGRPVATVSQSLPHVDGSAKKNGGNGNGKTS 218

  Fly   314 RNR--VRRESSMRQQQVQLTFGSEADDPLIHE-DFDFEGNLALFDKQAIWDDIES-TTQKPDVVR 374
            |:|  :.::|         ||||..||||..| |||||.|||||||||||::|:: .|:..:...
Mosquito   219 RSRKNLAKDS---------TFGSPDDDPLEMEGDFDFEKNLALFDKQAIWNEIDAHQTKASEAAA 274

  Fly   375 HIVNNHHHKPEQKYRHDENILASKPLQLRQIESMFGGS---QDFVTDDGLIIPTIPAYVRNKIEI 436
            ...|......:.|||||||:|.|.|.|.|||......|   |::|||:||:||:|||.:|:.:|.
Mosquito   275 RQRNAPSSAAKTKYRHDENVLVSTPAQYRQIVVQRVASRDAQEYVTDEGLVIPSIPATLRHTVEE 339

  Fly   437 SADKAGLSLQRQIDILARGASDLAITLLGGARRLTPANNHQWPKIAIICDGGKNMRTINIGAATG 501
            .|...|||.:||.|.|||||::||:.||||:|||||.|.||||||.|:|:|    :...:|.:|.
Mosquito   340 YAVSMGLSRERQHDFLARGATELALQLLGGSRRLTPNNQHQWPKIVIVCEG----KLDEVGISTA 400

  Fly   502 RQLASHGLTVLLYVEQAKLLEQNSSSPEISLFKATDNVIVHSVDALPTPDLVILSTNTANLSDAI 566
            ||||||||..::|:  ..|.|...:|.|:.|:.||.|.|...|:.||..||||.|.....|:|.:
Mosquito   401 RQLASHGLETVVYL--CSLTEATQNSSEVPLYMATGNKISVDVNTLPPCDLVIASVQNPRLTDQL 463

  Fly   567 RKWLSVNRASVLAIDPPPCGINEVAIKYSILPILPLNGISTATTSSSSSAAATPTPIASTSAAAS 631
            |||:|.:||.|||||||..|:..|:||.||||||||:||.                         
Mosquito   464 RKWISYSRAPVLAIDPPGAGLEGVSIKCSILPILPLDGID------------------------- 503

  Fly   632 ATKSAASTNNCGKLYLCNLGIPDKFYRDCGIKYKSPYGHKYVIPIHSK 679
                  ..:.||:|||||||||::.:|..||.||||: .|:|||||.:
Mosquito   504 ------QNDACGRLYLCNLGIPNQIFRRAGITYKSPF-DKFVIPIHRR 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edc3NP_648992.1 LSm16_N 5..69 CDD:212484 28/60 (47%)
FDF 343..>397 CDD:430668 28/55 (51%)
YjeF_N 453..583 CDD:444831 66/129 (51%)
Edc3XP_312817.5 None

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