DRSC/TRiP Functional Genomics Resources

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Protein Alignment Edc3 and edc3

DIOPT Version :9

Sequence 1:NP_648992.1 Gene:Edc3 / 39957 FlyBaseID:FBgn0036735 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_001120062.1 Gene:edc3 / 100145060 XenbaseID:XB-GENE-5890820 Length:505 Species:Xenopus tropicalis


Alignment Length:712 Identity:189/712 - (26%)
Similarity:283/712 - (39%) Gaps:251/712 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DWIGCAVSIACDEVLGVFQGLIKQIS--AEEITIVRAFRNG----VPLRKQNAEVVLKCTDIRSI 65
            ||:|..|||.|...|||:||.:..:.  .:.|::.:.|.||    ||      ||..:..||..:
 Frog     4 DWLGSIVSINCGNTLGVYQGCVSAVDHINQTISLTQPFHNGVKCLVP------EVTFRAGDISEL 62

  Fly    66 DLIEPAKQDLDGHTAPPPVVNKPTPVKLPHFSNILGKQQQLQLQQQQQQLQLQQQQKQQFQEQER 130
            .::|                                                             
 Frog    63 KILE------------------------------------------------------------- 66

  Fly   131 EQDLPSTPRSRANDNGRVAAGGASSSSGPRGNFNSALSDKMHQLKLIETNGSNGTLRTPQTSRAS 195
               :||......:|.                     |:|.......:.:...|||.:...|...|
 Frog    67 ---IPSESLKFTSDQ---------------------LNDHSTGFGYLPSRQQNGTSKQKPTVAQS 107

  Fly   196 SAQQQPQISTTPNSVAAFFGNMIPPKVEVKLGSYVSNTRESYCSSSGDSGEATGLSLGSSKPIDI 260
            :||.                  ||.:.|                     |:||..|  ||.|   
 Frog   108 TAQN------------------IPGREE---------------------GKATEPS--SSSP--- 128

  Fly   261 VSNGDGFYKQTAASSY-------GNTNGNVRRNGNANNNGNGTGNGSYTNGNGNGNGKNKRNRVR 318
                     |..:.||       .|...|.||..|:.::.:...|......:|..||:.|     
 Frog   129 ---------QPCSKSYIDRHSEAVNQPKNFRRRHNSWSSSSRYPNQVTPKKSGTKNGQMK----- 179

  Fly   319 RESSMRQQQVQLTFGSEADDPLIHEDFDFEGNLALFDKQAIWDDIESTTQKPDVVRHIVNNHHHK 383
                .|..:   .||.:.:: :...|||||||||||||.|::::|::              |..:
 Frog   180 ----ARDDE---CFGDDLEE-IPDTDFDFEGNLALFDKAAVFEEIDT--------------HERR 222

  Fly   384 -----------PEQK---YRHDENILASKPLQLRQIESMFGGSQDFVTDDGLIIPTIPAYVRNKI 434
                       |.::   ||||||||.|:|:..|:|.....|.:::.||.||::|:|...:..|:
 Frog   223 GGGGGARSRGTPNERPPTYRHDENILESEPIVYRKIVVPQSGGKEYCTDSGLVVPSISYVLHKKL 287

  Fly   435 EISADKAGLSLQRQIDILARGASDLAITLLGGARRLTPANNHQWPKIAIICDGGKNMRTINIGAA 499
            ...|:|.|||::|:::|....||.:|:|||||..||.|.|.||.|.:|::|  |.:::... |.:
 Frog   288 LCVAEKHGLSVERRLEISGVCASQMALTLLGGPNRLNPKNVHQRPTVALLC--GPHVKGAQ-GIS 349

  Fly   500 TGRQLASHGLTVLLYVEQ-AKLLEQNSSSPEISLFKATDNVIVHSVDALP--TPDLVI--LSTN- 558
            .||.||:|.:.::|::.. .|:||..::  |::||..|....|.||..||  ..||||  |..| 
 Frog   350 CGRHLANHDVDIILFLPNFVKMLEPVTN--ELNLFCQTQGKQVSSVKDLPECPVDLVINCLDCNE 412

  Fly   559 TANLSD-----AIRKWLSVNRASVLAIDPPPCG--INEVAIKYSILPILPLNGISTATTSSSSSA 616
            .:.|.|     |...|.:.|||.||.|| ||.|  :..:..|:|:...|||              
 Frog   413 NSFLRDQPWYRAAVDWANQNRAPVLNID-PPVGDHVQGIHAKWSLELGLPL-------------- 462

  Fly   617 AATPTPIASTSAAASATKSAASTNNCGKLYLCNLGIPDKFYRDCGIKYKSPYGHKYVIPIHS 678
                                |.....|::|||::|||.|.:|:.||.|.||:|.|:|||:||
 Frog   463 --------------------ALGEQAGRIYLCDIGIPQKVFREAGISYHSPFGCKFVIPLHS 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edc3NP_648992.1 LSm16_N 5..69 CDD:212484 22/67 (33%)
FDF 343..>397 CDD:286601 25/67 (37%)
YjeF_N 453..583 CDD:294225 54/140 (39%)
edc3NP_001120062.1 LSm16_N 2..66 CDD:212484 22/67 (33%)
Edc3_linker 98..191 CDD:293206 30/157 (19%)
FDF 193..297 CDD:286601 40/117 (34%)
YjeF_N 298..462 CDD:281800 62/169 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H11827
Inparanoid 1 1.050 183 1.000 Inparanoid score I3842
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D412946at33208
OrthoFinder 1 1.000 - - FOG0006369
OrthoInspector 1 1.000 - - oto102229
Panther 1 1.100 - - LDO PTHR13612
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X6088
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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