DRSC/TRiP Functional Genomics Resources

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Protein Alignment U4-U6-60K and AT2G05720

DIOPT Version :10

Sequence 1:NP_648990.1 Gene:U4-U6-60K / 39955 FlyBaseID:FBgn0036733 Length:553 Species:Drosophila melanogaster
Sequence 2:NP_178635.1 Gene:AT2G05720 / 815121 AraportID:AT2G05720 Length:276 Species:Arabidopsis thaliana


Alignment Length:340 Identity:112/340 - (32%)
Similarity:157/340 - (46%) Gaps:77/340 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 GPDSLRIARLWLADYSLPRAKDRLVRAREALEVPSAARAGRMVEMQKKLQSLAPLCSQVGDTRPV 264
            ||..||.||:.:....:.||..|:.|.......|...:........|..:.:....|:.||.||:
plant     2 GPTELREARIEITKDFIKRAALRIQRENRRRNDPDEDKNAETKLALKHCKDMVLGSSKFGDDRPL 66

  Fly   265 SSAAFSEDSSLLLTSSWSGLCKLWSVPDCELK-QTLRGHASYVGGVALRPGVKADEENVVAMASG 328
            :..:.|.|..:|:|.|.||:.|||.||....| ..|:||..:|..|...   ..|:|        
plant    67 TGCSLSRDGKILVTCSLSGVPKLWEVPQVTNKIVVLKGHKEHVTDVVFS---SVDDE-------- 120

  Fly   329 GHDGAVKLWGFNNEESIADITGHMPHRVSKVAFHPSGRFLATACYDSSWRLWDLEQKTEVLHQEG 393
                                                  .||||..|.:.::|    ||       
plant   121 --------------------------------------CLATASTDRTEKIW----KT------- 136

  Fly   394 HAKPVHCLSYHSDGSVLVT----GGLDAFGRVWDLRTGRCIMFLEGHLGAVFGVDFSPNGFHIAT 454
                        ||::|.|    .|.|:..|||||||.|.|:..:||:..|..|||||||:|:|:
plant   137 ------------DGTLLQTFKASSGFDSLARVWDLRTARNILIFQGHIKQVLSVDFSPNGYHLAS 189

  Fly   455 GSQDNTCKIWDLRRRQPVYTIPAHTNLISDVKYQQECGSFLVTCSYDSTTKIWSNKTWQPLKTLQ 519
            |.:||.|:|||||.|:.:|.||||.||:|.|||:.:...||.|.|:|....|||.:.:..:|:|.
plant   190 GGEDNQCRIWDLRMRKLLYIIPAHVNLVSQVKYEPQERYFLATASHDMNVNIWSGRDFSLVKSLV 254

  Fly   520 GHDNKVISVDIAPNS 534
            ||::||.|:|||.:|
plant   255 GHESKVASLDIAVDS 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
U4-U6-60KNP_648990.1 CCDC66 <113..>194 CDD:434558
SFM 132..>166 CDD:128776
WD40 repeat 264..301 CDD:293791 14/37 (38%)
WD40 <286..553 CDD:441893 88/254 (35%)
WD40 repeat 357..393 CDD:293791 8/35 (23%)
WD40 repeat 398..434 CDD:293791 15/39 (38%)
WD40 repeat 441..476 CDD:293791 20/34 (59%)
WD40 repeat 482..519 CDD:293791 13/36 (36%)
WD40 repeat 525..551 CDD:293791 6/10 (60%)
AT2G05720NP_178635.1 WD40 <61..268 CDD:441893 98/278 (35%)
WD40 repeat 66..104 CDD:293791 14/37 (38%)
WD40 repeat 110..145 CDD:293791 15/106 (14%)
WD40 repeat 176..211 CDD:293791 20/34 (59%)
WD40 repeat 217..254 CDD:293791 13/36 (36%)
Blue background indicates that the domain is not in the aligned region.

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