DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and Gabrp

DIOPT Version :10

Sequence 1:NP_648984.2 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_112291.1 Gene:Gabrp / 81658 RGDID:620532 Length:440 Species:Rattus norvegicus


Alignment Length:492 Identity:123/492 - (25%)
Similarity:210/492 - (42%) Gaps:103/492 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 LIQRL--------THVCRYDRLERP-FEYDSDG--KRL-------PIVVKTRIYVYFLQNLNSDL 93
            |.||:        ..|.|.|:|..| ||..:.|  |.|       |:.:...:.:..:.:::...
  Rat    15 LAQRMCIQGNQFNVEVSRSDKLSLPGFENLTAGYNKFLRPNFGGDPVRIALTLDIASISSISESN 79

  Fly    94 LQFKMHALLQLRFQDKRLAYKAFNRSDNILGQKHLSERLWLPHIFFANERESSILGTDEKDVLTS 158
            :.:.....|:.|:.|.||.::. |:|..:  ...|.|.||:|..:....::|.:......:.|..
  Rat    80 MDYTATIYLRQRWTDPRLVFEG-NKSFTL--DARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIR 141

  Fly   159 LSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMYNTSDLILEW-EPHTPISFDPEMR 222
            |...|.|:.:.|:..::.|.|:..|:|.|.|.|...||||.|:.:|:...| ..:..:.....:|
  Rat   142 LFSNGTVLYALRITTTVTCNMDLSKYPMDTQTCKLQLESWGYDGNDVEFSWLRGNDSVRGLENLR 206

  Fly   223 LTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWV 287
            |.:|.:.|::...|:.|.:         .|||:.|.....|:|.:.:::|:.|:||..:|.:|||
  Rat   207 LAQYTIQQYFTLVTVSQQE---------TGNYTRLVLQFELRRNVLYFILETYVPSTFLVVLSWV 262

  Fly   288 SFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVS-YIKVSEVWFLGCTFFIFGSLVEFAFV 351
            |||:..::.|.|..:|.:|:||..||......:||..: :||..:|:...|..|:||:|:|:|..
  Rat   263 SFWISLESVPARTCIGVTTVLSMTTLMIGSRTSLPNTNCFIKAIDVYLGICFSFVFGALLEYAVA 327

  Fly   352 N-------TIWRRKENIELKKVNSKYIIKSTLTPRPARRQIGGSLSNESRARSCSSL----DNIV 405
            :       .:..|....:.::||...||.|             |:|:..|..|.:|:    ||: 
  Rat   328 HYSSLQQMAVKDRGPAKDSEEVNITNIINS-------------SISSFKRKISFASIEISGDNV- 378

  Fly   406 SSTESVRNGNGTVNQGFNNY--LTVHPNLPIIRTECAEADTVSICSARTNNDHIVDVDKDKKDTP 468
                              ||  ||:            :|........|.....|:|.        
  Rat   379 ------------------NYSDLTM------------KASDKFKFVFREKIGRIIDY-------- 405

  Fly   469 PTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYWTF 505
              ||...|..    :||.|:.|||.:|:..|..||.:
  Rat   406 --FTIQNPSN----VDRYSKLLFPLIFMLANVFYWAY 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_648984.2 LIC 43..505 CDD:455710 123/490 (25%)
GabrpNP_112291.1 LIC 43..437 CDD:455710 113/464 (24%)
LGIC_ECD 60..241 CDD:475126 44/192 (23%)

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