DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and gabrg2

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_031754595.1 Gene:gabrg2 / 779514 XenbaseID:XB-GENE-5949005 Length:505 Species:Xenopus tropicalis


Alignment Length:538 Identity:121/538 - (22%)
Similarity:211/538 - (39%) Gaps:129/538 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 ITLILVLSIWTSVGVKAEE--EECPSMADAGSLQQTQLIQRLTH-----------VCRYDRLERP 63
            :.::|:||.......|.:|  |:.||       ..|.|:.|..|           :..||...||
 Frog    56 VRVLLILSFIQCSFQKDDEDYEDAPS-------NNTWLLTRKFHDNDVTSILNGLLKGYDNKLRP 113

  Fly    64 FEYDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAY----KAFNRSDNILG 124
               |...|  |.|:.|.:||..:..:|:..:::.:.......:.|:||.:    |....:.|::|
 Frog   114 ---DIGVK--PTVIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFNSTIKVLRLNSNMVG 173

  Fly   125 QKHLSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQ 189
                  ::|:|..||.|.:::........:.:..:..:|.|:.:.|:.....|.:....||.|:.
 Frog   174 ------KIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPMDEH 232

  Fly   190 FCSTVLESWMYNTSDLILEWE-PHTPISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGN 253
            .|.....|:.|...::|.:|: ....:......||.:::.....:.|..|::.         :|:
 Frog   233 SCPLEFSSYGYPKEEIIYQWKRSSVEVGDVRSWRLYQFSFVGLRNTTEEVKTT---------SGD 288

  Fly   254 YSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQS 318
            |..::...:|.|.:|::.:..|:|..:||.:||||||:..||.|.|..||.:|:|:..|||:...
 Frog   289 YVVMTVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIAR 353

  Fly   319 KNLPKVSYIKVSEVWFLGCTFFIFGSLVEFA----FVNTIWRRKENIELKKVNSKYIIKSTLTPR 379
            |:||||||:...:::...|..|:|.:|:|:.    ||:.....|:. |.||.|....:.|...| 
 Frog   354 KSLPKVSYVTAMDLFVSVCFIFVFAALMEYGTLHYFVSNRKPSKDK-EKKKKNPLLWMFSFKAP- 416

  Fly   380 PARRQIGGSLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPIIRTECAEADT 444
                                        |..:|..:.|:..                        
 Frog   417 ----------------------------TIDIRPRSATIQM------------------------ 429

  Fly   445 VSICSARTNNDHIVDVDK-------DKKDTPPTFTTMTPQEIAMW-----------IDRRSRFLF 491
                   .|..|:.:.|:       |.||....|..........|           ||..||..|
 Frog   430 -------NNATHLQERDEEYGYECLDGKDCASFFCCFEDCRTGAWRHGRIHIRVAKIDSYSRIFF 487

  Fly   492 PAMFLAFNALYW-TFVYV 508
            |..|..||.:|| :::|:
 Frog   488 PTAFCLFNLVYWVSYLYL 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 112/500 (22%)
Neur_chan_LBD 44..267 CDD:280998 47/238 (20%)
Neur_chan_memb 275..503 CDD:280999 62/249 (25%)
gabrg2XP_031754595.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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