DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecCl and gabrr2a

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_017207163.1 Gene:gabrr2a / 751659 ZFINID:ZDB-GENE-060825-164 Length:475 Species:Danio rerio


Alignment Length:524 Identity:142/524 - (27%)
Similarity:247/524 - (47%) Gaps:88/524 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LILVLSI----------------WTSVGVKAEE------EECPSMADAGSLQQTQLIQRLTHVCR 56
            |||||.:                ||. .|:.::      ::.|.:..:..|:..||::    |..
Zfish     9 LILVLFLGSFGECRNKHATRERRWTG-AVETQKHGTSLAKKPPDVTKSRRLKTEQLLK----VDD 68

  Fly    57 YDRLERPFEYDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAY-KAFNRSD 120
            :|...||   ...|..:|:.|.  :.|..|.:::...:.|.|...|:..::|:||:: .:.|:|.
Zfish    69 HDFTMRP---AFGGPAIPVGVD--VQVESLDSISEVDMDFTMTLYLRHYWKDERLSFTSSTNKSM 128

  Fly   121 NILGQKHLSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFP 185
            ...|:  |.:::|:|.:||.:.:.|.|..|..::::..:.|:|:|:.|.|:..:..|.|:|.:||
Zfish   129 TFDGR--LVKKIWVPDVFFVHSKRSFIHDTTTENIMLRVFPDGHVLYSLRVTVTAACNMDFSRFP 191

  Fly   186 FDQQFCSTVLESWMYNTSDLILEWE-PHTPISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGA 249
            .|.|.||..|||:.|...||:|.|: ....:|.|.::.|::: :.|.:|.|:       .|...:
Zfish   192 LDSQTCSLELESYAYTDEDLMLYWKNGDESLSIDEKISLSQF-LIQKFHTTS-------RLAFYS 248

  Fly   250 FAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLS 314
            ..|.|:.|.....|:|.|.|:||..|.|:.::|.:||||||:...|.|.|:.||.:|:|:..|:.
Zfish   249 STGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTII 313

  Fly   315 SSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIWRRKENIELKKVNSKYIIKSTLTPR 379
            :..:.::|:|||||..:::......|:|.|::|:|.||.:...:|..|.|           |..|
Zfish   314 TGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERRERK-----------LRDR 367

  Fly   380 PARRQIGGSLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPIIRTECAEADT 444
            ..|.|        |...:|.     :|.|.::.. :||.::...|.|..:...|::..|......
Zfish   368 AVREQ--------SLPCTCG-----MSHTRTMML-DGTYSEADTNSLAGYTEAPMVHEEVVPEKQ 418

  Fly   445 ------VSICSARTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYW 503
                  :|:.|..||.         ||........|.....   ||:.||.:||..::.||.:||
Zfish   419 EHMVVHLSVSSESTNT---------KKKGIRALRIMQNTHA---IDKYSRMIFPGAYIIFNLIYW 471

  Fly   504 TFVY 507
            : ||
Zfish   472 S-VY 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 130/469 (28%)
Neur_chan_LBD 44..267 CDD:280998 62/224 (28%)
Neur_chan_memb 275..503 CDD:280999 62/233 (27%)
gabrr2aXP_017207163.1 LIC 43..474 CDD:273305 132/487 (27%)
Neur_chan_LBD 60..266 CDD:280998 62/224 (28%)
Neur_chan_memb 273..471 CDD:280999 62/234 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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