DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and gabrr3a

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_001122232.1 Gene:gabrr3a / 570876 ZFINID:ZDB-GENE-080722-20 Length:472 Species:Danio rerio


Alignment Length:477 Identity:122/477 - (25%)
Similarity:212/477 - (44%) Gaps:98/477 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 QRLTHVCRYDRLERPFEYDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAY 113
            ::|..:..:|...||   ...|..:|:.:.  :.|..:..::...:.|.|...|:..:||.|||:
Zfish    68 EQLLRIEDHDFAMRP---GFGGSAIPVGID--VQVESIDGISEVNMDFTMTLYLRHYWQDDRLAF 127

  Fly   114 KAFNRSDNILGQKHLSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCW 178
            .:.|........: |.:::|:|.:||.:.:.|.|..|..::::..:.|:||::.|.|:..:..|.
Zfish   128 PSSNNKSRTFDAR-LVKKIWVPDVFFVHSKRSFIHDTTMENIMLRVFPDGNILYSVRITVTALCS 191

  Fly   179 MNFQKFPFDQQFCSTVLESWMYNTSDLILEWEPHTPISFDPEMRLTEYNMAQF----WHNTTIVQ 239
            |:|.:||.|.|.||..|||:.||.:||:|.|:     :.:..:|..|..::||    :|.:.   
Zfish   192 MDFSRFPLDTQNCSLELESYAYNENDLMLYWK-----NGNDSLRTDEIALSQFFIEEFHPSY--- 248

  Fly   240 SDGDNLRHGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGT 304
                .|...:..|.|:.|.....|:|.|.|::|..|.|:|::|.:||||||:...|.|.|:.||.
Zfish   249 ----GLAFYSSTGWYNRLYINFILRRHIFFFMLQTYFPTMLMVMLSWVSFWIDRRAVPARVSLGI 309

  Fly   305 STMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIWRRKENIELKKVNSK 369
            :|:|:..|:.:..|.::|:|||:|..:::......|:|.|::|:|.||.....:|..:|:|    
Zfish   310 TTVLTMSTIITGVSASMPQVSYVKAVDIYLWASFLFVFLSVIEYAAVNYFTTVEEMKKLQK---- 370

  Fly   370 YIIKSTLTPRPARRQIGGSLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPI 434
                             |.|.....|....:.|..                 |::.:...| .|.
Zfish   371 -----------------GKLPASYDATQAMAYDGC-----------------FHDDIDASP-FPE 400

  Fly   435 IRTECAEADTVSICSARTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMW----------------- 482
            :.|..:...|:...::.|             :.|||..|      .:|                 
Zfish   401 LPTTPSTTRTIPARASST-------------EPPPTEGT------RLWRKRSVGKNIRFIMSNSY 446

  Fly   483 -IDRRSRFLFPAMFLAFNALYW 503
             ||..||.|||..:|.||.:||
Zfish   447 MIDSYSRILFPLAYLLFNIIYW 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 122/477 (26%)
Neur_chan_LBD 44..267 CDD:280998 58/221 (26%)
Neur_chan_memb 275..503 CDD:280999 59/245 (24%)
gabrr3aNP_001122232.1 LIC 67..471 CDD:273305 122/477 (26%)
LGIC_ECD 88..272 CDD:355788 53/198 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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