DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecCl and gabrr2b

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_697486.2 Gene:gabrr2b / 569032 ZFINID:ZDB-GENE-041014-174 Length:464 Species:Danio rerio


Alignment Length:497 Identity:125/497 - (25%)
Similarity:228/497 - (45%) Gaps:102/497 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 LQQTQLIQRLTHVCRYDRLERPFEYDSD------GKRLPIVVKTRIYVYFLQNLNSDLLQFKMHA 100
            |.:..|.:..||..:.:.|....::|..      |..:|:.|.  :.|..|.:::...:.|.|..
Zfish    40 LFKKMLDETKTHAVKSEHLLSVEDHDFTMRPAFAGPAVPVGVD--VQVESLDSISEVDMDFTMTL 102

  Fly   101 LLQLRFQDKRLAYKA-FNRSDNILGQKHLSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGN 164
            .|:..::|:||::.: .|:|....|:  |.:::|:|.:||.:.:.|.|..|..::::..:.|:|:
Zfish   103 YLRHYWKDERLSFPSKHNKSMTFDGR--LVKKIWVPDVFFVHSKRSFIHDTTTENIMIRVYPDGH 165

  Fly   165 VIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMYNTSDLILEWEP-HTPISFDPEMRLTEYNM 228
            |:.|.|:..:..|.|:|.:||.|.|.|:..|||:.|...||:|.|:. ...:|.|.::.|::: :
Zfish   166 VLYSLRVTVTSACNMDFSRFPLDTQTCTLELESYAYTDEDLMLYWKSGDESLSTDDKISLSQF-L 229

  Fly   229 AQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQA 293
            .|.:|.|:       .|...:..|.|:.|.....|:|.|.|:||..|.|:.::|.:||||||:..
Zfish   230 IQKFHTTS-------RLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDR 287

  Fly   294 DASPPRIMLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIWRRK 358
            .|.|.|:.||.:|:|:..|:.:..:.::|:|||||..:::......|:|.|::|:|.||.:....
Zfish   288 RAVPARVSLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVH 352

  Fly   359 ENIELKKVNSKYIIKSTLTPRPARRQIGGSLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGF- 422
            :..:.|                        |..::...:|.     :||..::     .:|:.: 
Zfish   353 DGTDRK------------------------LRQKTLPGTCD-----ISSMRTM-----MLNEAYG 383

  Fly   423 ---NNYLTVHPNLPIIRTECAE-ADTVSIC----------SART-------NNDHIVDVDKDKKD 466
               :|.|..:....:...|.|| .|.:::|          ..||       .|.|.         
Zfish   384 RPDSNGLAGYTQTTVSSEEPAEKQDPIAVCLSIGPEVKGAKKRTLRGLRIIQNTHA--------- 439

  Fly   467 TPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYWTFVYV 508
                            ||..||.:||..|:.||.:||: ||:
Zfish   440 ----------------IDAYSRMIFPGAFIFFNLIYWS-VYL 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 122/491 (25%)
Neur_chan_LBD 44..267 CDD:280998 60/230 (26%)
Neur_chan_memb 275..503 CDD:280999 56/249 (22%)
gabrr2bXP_697486.2 LIC 55..463 CDD:273305 119/479 (25%)
Neur_chan_LBD 56..261 CDD:280998 57/216 (26%)
Neur_chan_memb 268..460 CDD:280999 56/250 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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