DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecCl and gabra6b

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_002667403.3 Gene:gabra6b / 559693 ZFINID:ZDB-GENE-080815-1 Length:444 Species:Danio rerio


Alignment Length:519 Identity:124/519 - (23%)
Similarity:213/519 - (41%) Gaps:108/519 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 WITLILVLSIWTSVGVKAEEEECPSMADAGSLQQTQL-IQRLTHVC-----RYDRLERPFEYDSD 69
            |:...|.||             |.....|....:|:: :..:|.:.     .||...||      
Zfish     3 WVRTCLFLS-------------CVGQVVANPPTETRIYLDNITRILDRLLDGYDNRLRP------ 48

  Fly    70 GKRLPIV-VKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKA---FNRSDNILGQKHLSE 130
            |...|:. |||.|:|.....::...:::.|....:..:.|.||.::.   ..|.:|::..|    
Zfish    49 GFGGPVTEVKTDIFVTSFGPVSDVEMEYTMDVFFRQTWIDDRLKFEGPIEILRLNNLMVSK---- 109

  Fly   131 RLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVL 195
             :|.|..||.|.:.|........:.|..:...|.::.:.|:..:..|.|....||.|...|....
Zfish   110 -IWTPDTFFRNGKRSISHNMTTPNKLFRIMQNGTILYTMRLTINAECPMRLINFPMDGHSCPLKF 173

  Fly   196 ESWMYNTSDLILEWEPHTPISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFT 260
            .|:.|..|:::..|: ..|: |..|:.....::.|:    .::.....:.|..:..|.|..::..
Zfish   174 GSYAYPMSEIVYTWK-KGPL-FSVEVPQESSSLLQY----DLIGQTVSSERLKSNTGEYIVMTVY 232

  Fly   261 VNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVS 325
            .:|:|::||:|:..|:|.:|.|.::.||||:..::.|.|.:.|.:|:|:..|||.|...:|||||
Zfish   233 FHLQRKMGFFLIQTYIPCIMTVILAQVSFWIDKESVPARTVFGITTVLTMTTLSISARHSLPKVS 297

  Fly   326 YIKVSEVWFLG-CTFFIFGSLVEFAFVNTIWRRKENIELKKVNSKYIIKSTLTPRPARRQIGGSL 389
            |....: ||:. |..|:|.:|:|||.||.....:.|.||::.|                 |..:.
Zfish   298 YATAMD-WFIAVCFAFVFSALIEFAAVNYFSTLQANKELRRAN-----------------IARAA 344

  Fly   390 SNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPIIRTECAEADTVSICSARTNN 454
            :..:.|||               :|.|.:|             |:        |...:...|.|:
Zfish   345 AAAAAARS---------------DGEGVLN-------------PL--------DPGGVLKKRMNS 373

  Fly   455 DHIVDVDKDKKDTPPTFTTMTPQEIAM----------WIDRRSRFLFPAMFLAFNALYWTFVYV 508
              :.......:.:.|:.:....|..|:          .||:.||.|||..|.|||.:|| .||:
Zfish   374 --LSQRSATDRFSRPSQSDFHQQGSAVPANNMLIGTSIIDKYSRILFPLSFGAFNLVYW-IVYL 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 116/482 (24%)
Neur_chan_LBD 44..267 CDD:280998 48/232 (21%)
Neur_chan_memb 275..503 CDD:280999 63/238 (26%)
gabra6bXP_002667403.3 Neur_chan_LBD 32..239 CDD:280998 47/223 (21%)
LIC 33..433 CDD:273305 114/473 (24%)
Neur_chan_memb 246..430 CDD:280999 63/239 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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