DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecCl and pHCl-2

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_001303470.1 Gene:pHCl-2 / 43703 FlyBaseID:FBgn0039840 Length:526 Species:Drosophila melanogaster


Alignment Length:502 Identity:240/502 - (47%)
Similarity:324/502 - (64%) Gaps:38/502 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 SVGVKAEE---EECPSMADAGSLQQTQLIQRLTHVCRYDRLERPFEYDSDGKRLPIVVKTRIYVY 84
            ||.:...:   ..|||:.:|.|:...:|:.|||..|||||:..|..::.||:.:|:.:..|.|:|
  Fly    48 SVSINLSQSTVNNCPSLKNAESMALMELLTRLTAPCRYDRMVPPVVHNKDGEEVPMDIYARFYIY 112

  Fly    85 FLQNLNSDLLQFKMHALLQLRFQDKRLAYKAF--NRSDNILGQKHLSERLWLPHIFFANERESSI 147
            .::||:|..|||.:..|||||:.|.|||:.::  ||...|:|:..|.:.||:||||..||:.|::
  Fly   113 VMKNLDSSDLQFTVQGLLQLRYLDPRLAFSSYLPNRRQPIMGESELKKMLWVPHIFLTNEQASTV 177

  Fly   148 LGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMYNTSDLILEWEPH 212
            |||..||.|||:.|.|.|:.|||:||:|||||||||||||:|.|.|.||||||||:.:.|.||..
  Fly   178 LGTSAKDELTSIYPNGTVLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETD 242

  Fly   213 TPISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFTVNLKREIGFYLLDYYLP 277
            .|:|||.:::|||||:....:|.:|..|:...:.||:..||||.:||||.|.||:|:|::||:||
  Fly   243 NPVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYSIISFTVLLTREVGYYVIDYFLP 307

  Fly   278 SMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIF 342
            |:|||.|||||||||||.:|.|..||.:|:|||||||.||..||.||||:.:||||||.||.|||
  Fly   308 SIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFIF 372

  Fly   343 GSLVEFAFVNTIWRRKENIELKKVNSKYIIKSTLTPRPARRQIGGSLSNESRARSCSSLDNIVSS 407
            |||||||||||||||..:::|||..:|||:|||..|...:.:..|....:|...:.|:     :|
  Fly   373 GSLVEFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHLKKHRRHGYRRTDSTMSTMST-----TS 432

  Fly   408 TESVRNGNGTVNQGFNNYLTVHPNLPII------RTECA----EADTVSICSARTNNDHIVDVDK 462
            .:.....|.||       :|:  ..|||      |.:.|    |.|..|...:.         |.
  Fly   433 MDKTCGPNNTV-------ITI--ETPIIIGGSLSREDSAISLDEQDETSTSESS---------DS 479

  Fly   463 DKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYWTFVYVL 509
            .|:....||.||||:|:::||||:.||:||..|:.||||:||.||.|
  Fly   480 SKEKPAQTFATMTPKEVSLWIDRKMRFVFPLSFIVFNALFWTLVYCL 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 229/473 (48%)
Neur_chan_LBD 44..267 CDD:280998 112/224 (50%)
Neur_chan_memb 275..503 CDD:280999 111/237 (47%)
pHCl-2NP_001303470.1 LIC 46..522 CDD:273305 236/496 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45469326
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1260459at2759
OrthoFinder 1 1.000 - - FOG0012730
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.850

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