DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and GluClalpha

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster


Alignment Length:515 Identity:141/515 - (27%)
Similarity:234/515 - (45%) Gaps:81/515 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 FWITL----ILVLSIWTSVGVKAEEEECPSMADAGSLQQTQLIQRLTHVCRYDRLERPFEYD-SD 69
            ||..|    :...|:..:..:...|:|            .:::.::....:||...||...: :|
  Fly     7 FWAILYFASLCSASLANNAKINFREKE------------KKVLDQILGAGKYDARIRPSGINGTD 59

  Fly    70 GKRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDNILGQ-KHL----S 129
            |   |.||:..|:|..:..::...:::.:....:.::.|:||.:      |:|.|: |:|    :
  Fly    60 G---PAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWTDERLKF------DDIQGRLKYLTLTEA 115

  Fly   130 ERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTV 194
            .|:|:|.:||:||:|.........:|...:.|.|:|:.|.|:..:|.|.||.:.:|.|:|.||..
  Fly   116 NRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLR 180

  Fly   195 LESWMYNTSDLILEWEPHTPISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSF 259
            :.|:.:.|:||:..|:...|:.....:.|..:.:.:|       .:|..|.:..  .|.||.|..
  Fly   181 MASYGWTTNDLVFLWKEGDPVQVVKNLHLPRFTLEKF-------LTDYCNSKTN--TGEYSCLKV 236

  Fly   260 TVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKV 324
            .:..|||..:||:..|:|..|:|.:|||||||...|.|.|:.||.:|:|:..|.:|..:.:||.|
  Fly   237 DLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQTSGINASLPPV 301

  Fly   325 SYIKVSEVWFLGCTFFIFGSLVEFAFVNTIWRRKEN-IELKKVNSKYIIKSTLTPRPARRQI-GG 387
            ||.|..:||...|..|:||:|:|||.||...|...| ..:.|.|.|          ..||.: ..
  Fly   302 SYTKAIDVWTGVCLTFVFGALLEFALVNYASRSGSNKANMHKENMK----------KKRRDLEQA 356

  Fly   388 SLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPII---RTECAEADTVSICS 449
            ||...|......|......:::..|.|      |....|..||..|:.   |.:|.         
  Fly   357 SLDAASDLLDTDSNATFAMASQFARGG------GQQKPLVRHPGDPLALEKRLQCE--------- 406

  Fly   450 ARTNNDHIVDVDKDKK-DTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYW-TFVY 507
                    |.:...|: :...|:.:..|.. :..||..||..||.:|..||.:|| |:::
  Fly   407 --------VHMQAPKRPNCCKTWLSKFPTR-SKRIDVISRITFPLVFALFNLVYWSTYLF 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 134/474 (28%)
Neur_chan_LBD 44..267 CDD:280998 58/228 (25%)
Neur_chan_memb 275..503 CDD:280999 71/233 (30%)
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 140/511 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447289
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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