DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and nAChRbeta1

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster


Alignment Length:548 Identity:111/548 - (20%)
Similarity:209/548 - (38%) Gaps:135/548 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 WITL-ILVLSIWTSVGVKAEEEECPSMADAGSLQQTQLIQRLTHVCRYDRLERPFEYDSDGKRLP 74
            |:.. ||||..::.|....:||              :|::.|..  .|::|.||.:      .:.
  Fly     8 WLLCSILVLVAFSLVSASEDEE--------------RLVRDLFR--GYNKLIRPVQ------NMT 50

  Fly    75 IVVKTRIYVYFLQ--NLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDNILGQKHL-SERLWLPH 136
            ..|..|..:.|:|  |:|......|.:..|:|.:.|.:|.:...:...  :|...| .:::|.|.
  Fly    51 QKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYDYQLQWDEADYGG--IGVLRLPPDKVWKPD 113

  Fly   137 IFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLY---CWMNFQKFPFDQQFCSTVLESW 198
            |...|..:.:.....:.:||  :.|.|.|:   .:..::|   |.::...||||||.|.....||
  Fly   114 IVLFNNADGNYEVRYKSNVL--IYPTGEVL---WVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSW 173

  Fly   199 MYNTSDLILEWEPHTPISFDPEMRLTEYN------MAQFWHNTT--IVQ-------SDGDNLRHG 248
            .:|                ..::.|..||      ::.:|.:.|  |::       .:||:    
  Fly   174 TFN----------------GDQVSLALYNNKNFVDLSDYWKSGTWDIIEVPAYLNVYEGDS---- 218

  Fly   249 AFAGNY---SSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSF 310
                |:   :.::|.:.::|:..||.::..||:::|..:..:.|:|.|:|. .::.||.|.:||.
  Fly   219 ----NHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAG-EKVTLGISILLSL 278

  Fly   311 ITLSSSQSKNLPKVSYIKVSEVWFLGCTFFI--FGSLVEFAFVNTIWR----RKENIELKKVNSK 369
            :......||.||..|.:......:|..||.:  ...||....:|..:|    .:..:.::.:...
  Fly   279 VVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLH 343

  Fly   370 YIIKSTLTPRPARRQIGGSLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTV------ 428
            |:.......||.:.::...:.....:.......:..|..|..::.:..  .|..:.:.|      
  Fly   344 YLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAI--GGKQSKMEVMELSDL 406

  Fly   429 -HPNLPI---------------IRTECAEADTVSI---CSART-----------NNDHIVDVDKD 463
             |||..|               .|.|...:|::.:   .|..|           |.|..:...:|
  Fly   407 HHPNCKINRKVNSGGELGLGDGCRRESESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTRED 471

  Fly   464 KKDTPPTFTTMTPQEIAMWIDRRSRFLF 491
            .|            .:||.|||...::|
  Fly   472 WK------------YVAMVIDRLQLYIF 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 103/515 (20%)
Neur_chan_LBD 44..267 CDD:280998 51/246 (21%)
Neur_chan_memb 275..503 CDD:280999 50/259 (19%)
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 111/548 (20%)
Neur_chan_LBD 28..236 CDD:280998 53/260 (20%)
Neur_chan_memb 243..498 CDD:280999 50/260 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447280
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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