DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and nAChRbeta3

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster


Alignment Length:388 Identity:86/388 - (22%)
Similarity:136/388 - (35%) Gaps:101/388 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 DRLERPF--EYDSDGKRL----PIVVKTRIYVYF--LQNLNSDLLQFKMHALLQLRFQDKRLAYK 114
            |||....  .||||.:.:    |..|...:.|.:  :..||..|   ..|..|.||::|:...::
  Fly    52 DRLHAGLFTNYDSDVQPVFQGTPTNVSLEMVVTYIDIDELNGKL---TTHCWLNLRWRDEERVWQ 113

  Fly   115 AFNRSDNILGQKHLSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWM 179
            . ::.|||......|..:|.|.|...|..|..::.    :...:||.:|:.........:.||.:
  Fly   114 P-SQYDNITQITLKSSEVWTPQITLFNGDEGGLMA----ETQVTLSHDGHFRWMPPAVYTAYCEL 173

  Fly   180 NFQKFPFDQQFCSTVLESW---------------MYNTSDLIL--EWEPHTPISFDPEMRLTEYN 227
            |...:|.|:|.|...:.||               ..:..||:.  |||                 
  Fly   174 NMLNWPHDKQSCKLKIGSWGLKVVLPENGTARGESLDHDDLVQSPEWE----------------- 221

  Fly   228 MAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQ 292
                     ||    |:..|......|..:.:|:..:|....|....|.|:..||.::..:|||.
  Fly   222 ---------IV----DSRAHFVSQDYYGYMEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLP 273

  Fly   293 ADASPPRIMLG-------TSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAF 350
            ......:||:.       .:.::.|..|....|.|.|.|             ..|...||: :..
  Fly   274 PHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNNTPLV-------------VIFYSTSLL-YLS 324

  Fly   351 VNTIWRRKENIELKKVNSKYIIKSTLTPRPARRQIGG-----------SLSNESRARSCSSLD 402
            |:||   .|.:.|.....|:  |..| |...|:.:.|           |.:.||:|.....:|
  Fly   325 VSTI---VEVLVLYLATGKH--KRRL-PEALRKLLHGHLGTWLLLSVFSTTGESQAEKTKEMD 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 86/388 (22%)
Neur_chan_LBD 44..267 CDD:280998 51/233 (22%)
Neur_chan_memb 275..503 CDD:280999 34/146 (23%)
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 86/388 (22%)
Neur_chan_LBD 52..247 CDD:280998 50/232 (22%)
Neur_chan_memb 255..434 CDD:280999 34/147 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447271
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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