DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and lgc-43

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_001023062.1 Gene:lgc-43 / 259591 WormBaseID:WBGene00008076 Length:679 Species:Caenorhabditis elegans


Alignment Length:335 Identity:72/335 - (21%)
Similarity:146/335 - (43%) Gaps:34/335 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 EEEECPSMADAGSLQQTQLIQRLTHVCRYDRLERPFEYDSDGKRLPIVVKTRIYVYFLQNLNSDL 93
            ||.......|.||.....:::.:.    ||....|..::.    :|:.|.......:|.|.:|::
 Worm   306 EERRANEHRDYGSSYILPVLKSVD----YDNTSVPLAFND----IPVNVAVAFNFLYLANFDSEM 362

  Fly    94 LQFKMHALLQLRFQDKRLAYKAFNRSDNI-LGQKHLSERLWLPHIFFANERESSILGTDEKDVLT 157
            ::|.|...::..:.|.||..   |.:..| :.:|.:.|::|.|..:..|.:.|........::..
 Worm   363 MEFSMDVEMEFSWIDIRLVN---NYTKPIRIREKPIIEQIWRPDPYIVNSKHSYFHYVSFPNIRM 424

  Fly   158 SLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMYNTSDLILEWEPHTPISFD---- 218
            .::|||.|..:.|:.:...|:|:|..:|.|:|.|...:.|..|:...:...|..: ||.|.    
 Worm   425 RITPEGLVTYTVRVSSVCSCFMSFCLYPHDRQECDLRISSIAYSNQYVKFHWHSN-PIKFQSKIT 488

  Fly   219 -PEMRLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIV 282
             ||:.:|:...|:......:|.:              |.|....:|:|:...::::.|:||.:.:
 Worm   489 LPELHITKIKTAECSTKGKLVDA--------------SCLRIIFSLERDSARFVIEKYVPSTLAM 539

  Fly   283 AISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVE 347
            ..:||:.::..:....||:...:.:|:.:.:.....:  .:.||:...:|||.....|...||:|
 Worm   540 MFAWVAPYVPYNYEDVRIITPITVLLTLVQMEKGDKE--IRTSYLTSIDVWFAAMKSFTVLSLLE 602

  Fly   348 FAFVNTIWRR 357
            ...|..:.:|
 Worm   603 SLAVLALIKR 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 67/321 (21%)
Neur_chan_LBD 44..267 CDD:280998 48/228 (21%)
Neur_chan_memb 275..503 CDD:280999 19/83 (23%)
lgc-43NP_001023062.1 LGIC_ECD_anion 344..523 CDD:349788 43/196 (22%)
LGIC_TM 527..665 CDD:365787 19/88 (22%)
TM1 helix 527..551 CDD:349850 5/23 (22%)
TM2 helix 555..577 CDD:349850 3/23 (13%)
TM3 helix 583..609 CDD:349850 8/25 (32%)
TM4 helix 610..665 CDD:349850 1/3 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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