DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and GABRG3

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_011519732.1 Gene:GABRG3 / 2567 HGNCID:4088 Length:473 Species:Homo sapiens


Alignment Length:529 Identity:120/529 - (22%)
Similarity:222/529 - (41%) Gaps:94/529 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LILVLSIWTSVGVKAEEEECPSMADAGSLQQ------------TQLIQRLTHVCRYDRLERPFEY 66
            |:|:|.:::.:..::.:.|.....|:.|.|:            |.::.:|..  .||:..||   
Human     5 LLLLLCLFSGLHARSRKVEEDEYEDSSSNQKWVLAPKSQDTDVTLILNKLLR--EYDKKLRP--- 64

  Fly    67 DSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAY----KAFNRSDNILGQKH 127
              |....|.|:...|||..:..::|..:::::.......:.|.||.:    |....:.|::|   
Human    65 --DIGIKPTVIDVDIYVNSIGPVSSINMEYQIDIFFAQTWTDSRLRFNSTMKILTLNSNMVG--- 124

  Fly   128 LSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCS 192
               .:|:|...|.|.:.:........:.|..:..:|.::.:.|:..:..|.:....||.|:..|.
Human   125 ---LIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCP 186

  Fly   193 TVLESWMYNTSDLILEWEPHTPISFDPE-MRLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSS 256
            .:..|:.|...::|..|..::..:.|.: .||.:::.....:.|.||.:.         ||:|..
Human   187 LIFSSYGYPKEEMIYRWRKNSVEAADQKSWRLYQFDFMGLRNTTEIVTTS---------AGDYVV 242

  Fly   257 LSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNL 321
            ::....|.|.:|::.:..|:|.::.|.:||||||::.||:|.|..||.:|:|:..|||:...|:|
Human   243 MTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTALGITTVLTMTTLSTIARKSL 307

  Fly   322 PKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIWRRKENIELKKVNSKYIIKSTLTPRPARRQIG 386
            |:|||:...:::...|..|:|.:|:|:|.:|.....::....||..|       |....:.|.|.
Human   308 PRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYSSCRKPTTTKKTTS-------LLHPDSSRWIP 365

  Fly   387 GSLSNESRA-----RSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVHPNLPIIRTECAEADTVS 446
            ..:|.::.:     ::.|.||.....|..:...|....|.|.:....         ||.      
Human   366 ERISLQAPSVRIALQNYSLLDMRPPPTAMITLNNSVYWQEFEDTCVY---------ECL------ 415

  Fly   447 ICSARTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMW-----------IDRRSRFLFPAMFLAFNA 500
                            |.||....|......:...|           :|..||..||..||.||.
Human   416 ----------------DGKDCQSFFCCYEECKSGSWRKGRIHIDILELDSYSRVFFPTSFLLFNL 464

  Fly   501 LYWT-FVYV 508
            :||. ::|:
Human   465 VYWVGYLYL 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 113/495 (23%)
Neur_chan_LBD 44..267 CDD:280998 46/239 (19%)
Neur_chan_memb 275..503 CDD:280999 63/243 (26%)
GABRG3XP_011519732.1 Neur_chan_LBD 48..253 CDD:280998 46/226 (20%)
LIC 50..470 CDD:273305 111/479 (23%)
Neur_chan_memb 260..467 CDD:280999 63/244 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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