DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecCl and GABRA6

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_000802.2 Gene:GABRA6 / 2559 HGNCID:4080 Length:453 Species:Homo sapiens


Alignment Length:539 Identity:136/539 - (25%)
Similarity:222/539 - (41%) Gaps:137/539 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SEIFWITLILVLSIWTSVGVKAEEEECPSMADAGSLQQTQLIQRLTHVCR-YDRLERPFEYDSDG 70
            |.:.|:.:||.|.  .::| |.|.|        |:.....:.:.|.::.. ||...||    ..|
Human     3 SSLPWLCIILWLE--NALG-KLEVE--------GNFYSENVSRILDNLLEGYDNRLRP----GFG 52

  Fly    71 KRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDNILGQKHLS-ERLWL 134
            ..: ..|||.|||.....::...:::.|....:..:.|:||   .|.....||...:|. .::|.
Human    53 GAV-TEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWTDERL---KFGGPTEILSLNNLMVSKIWT 113

  Fly   135 PHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWM 199
            |..||.|.::|........:.|..:...|.::.:.|:..:..|.|....||.|...|.....|:.
Human   114 PDTFFRNGKKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYA 178

  Fly   200 YNTSDLILEWEPHTPISFD-PE--MRLTEYNMAQFWHNTTIVQSDGDNLRHGAFAGNYSSLSFTV 261
            |..|::|..|:.....|.: ||  ..|.:|::.....::..::|:         .|.|..::...
Human   179 YPKSEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETIKSN---------TGEYVIMTVYF 234

  Fly   262 NLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVSY 326
            :|:|::|::::..|.|.:|.|.:|.||||:..::.|.|.:.|.:|:|:..|||.|...:||||||
Human   235 HLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSY 299

  Fly   327 IKVSEVWFLG-CTFFIFGSLVEFAFVN----------------------TIWRRKENIELKKV-- 366
            ....: ||:. |..|:|.:|:|||.||                      ||.:..|.:|.:.|  
Human   300 ATAMD-WFIAVCFAFVFSALIEFAAVNYFTNLQTQKAKRKAQFAAPPTVTISKATEPLEAEIVLH 363

  Fly   367 -NSKYIIKSTLTPRPARRQIGGSLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVHP 430
             :|||.:|..:|          |||..           ||||:|:            |..||   
Human   364 PDSKYHLKKRIT----------SLSLP-----------IVSSSEA------------NKVLT--- 392

  Fly   431 NLPIIRTECAEADTVSICSARTNNDHIVDVDKDKKDTPPTFTTMTPQEIA------MWIDRRSRF 489
            ..||:::                                  |.:||..::      ..||:.||.
Human   393 RAPILQS----------------------------------TPVTPPPLSPAFGGTSKIDQYSRI 423

  Fly   490 LFPAMFLAFNALYWTFVYV 508
            |||..|..||.:||. ||:
Human   424 LFPVAFAGFNLVYWV-VYL 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 124/498 (25%)
Neur_chan_LBD 44..267 CDD:280998 50/227 (22%)
Neur_chan_memb 275..503 CDD:280999 71/259 (27%)
GABRA6NP_000802.2 Neur_chan_LBD 5..440 CDD:332142 133/534 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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