DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecCl and Gabrb2

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_008765857.1 Gene:Gabrb2 / 25451 RGDID:2650 Length:506 Species:Rattus norvegicus


Alignment Length:499 Identity:133/499 - (26%)
Similarity:229/499 - (45%) Gaps:87/499 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 YDRLERPFEYDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDN 121
            ||...||   |..|.  |:.|...|.:..:..::...:.:.:....|..::||||:|.....  |
  Rat    47 YDIRLRP---DFGGP--PVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPL--N 104

  Fly   122 ILGQKHLSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPF 186
            :.....::::||:|..:|.|:::|.:.|...|:.:..|.|:|.|:...|:..:..|.|:.:::|.
  Rat   105 LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPL 169

  Fly   187 DQQFCSTVLESWMYNTSDLILEWEPH-------TPISFDPEMRLTEYNMAQFWHNTTIVQSDGDN 244
            |:|.|:..:||:.|.|.|:...|...       |.|.. |:..:.:|.:.    ...:|.|    
  Rat   170 DEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIEL-PQFSIVDYKLI----TKKVVFS---- 225

  Fly   245 LRHGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLS 309
                  .|:|..||.:..|||.||:::|..|:||::|..:||||||:..|||..|:.||.:|:|:
  Rat   226 ------TGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLT 284

  Fly   310 FITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIW------RRKE--------N 360
            ..|:::...:.|||:.|:|..:::.:||..|:|.:|:|:|.||.|:      |:|:        |
  Rat   285 MTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAANAN 349

  Fly   361 IELKKVNSKYIIKSTLTPRPARRQIGGSLSNESRAR-----SCSSLD---NIVSSTESVRNGNGT 417
            .|..:::...|....:.....:.|   ||.:.:|..     |...:|   ||:.||..::|...|
  Rat   350 NEKMRLDVNKIFYKDIKQNRTQYQ---SLWDPTRWTTYYHFSLYMMDPHENILLSTLEIKNEMAT 411

  Fly   418 VN--QGFNNYLTVHPNLPIIRTECAEADTVSICSA--------RTNNDHIVDVDKDK-------- 464
            ..  .|..:     |...::   ..:|.::....|        |...:..|...|.:        
  Rat   412 SEAVMGLGD-----PRSTML---AYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQL 468

  Fly   465 KDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYWTFVYV 508
            |.|.|..|.:..      |||.||..||.:|..||.:||.: ||
  Rat   469 KITIPDLTDVNA------IDRWSRIFFPVVFSFFNIVYWLY-YV 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 131/494 (27%)
Neur_chan_LBD 44..267 CDD:280998 54/216 (25%)
Neur_chan_memb 275..503 CDD:280999 72/267 (27%)
Gabrb2XP_008765857.1 LIC 9..504 CDD:273305 131/496 (26%)
Neur_chan_LBD 40..242 CDD:280998 54/216 (25%)
Neur_chan_memb 249..501 CDD:280999 72/268 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.