DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecCl and Gabrb1

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_037088.1 Gene:Gabrb1 / 25450 RGDID:2649 Length:474 Species:Rattus norvegicus


Alignment Length:495 Identity:136/495 - (27%)
Similarity:219/495 - (44%) Gaps:112/495 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 YDRLERPFEYDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDN 121
            ||...||   |..|.  |:.|..||.|..:..::...:.:.:....|..::||||:|.....  |
  Rat    48 YDIRLRP---DFGGP--PVDVGMRIDVASIDMVSEVNMDYTLTMYFQQSWKDKRLSYSGIPL--N 105

  Fly   122 ILGQKHLSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPF 186
            :.....::::||:|..:|.|:::|.:.|...|:.:..|.|:|.|:...|:..:..|.|:.:::|.
  Rat   106 LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPL 170

  Fly   187 DQQFCSTVLESWMYNTSDLILEWEPH-------TPISFDPEMRLTEYNM----AQFWHNTTIVQS 240
            |:|.|:..:||:.|.|.|:...|...       ..|.. |:..:.:|.|    .:|   ||    
  Rat   171 DEQNCTLEIESYGYTTDDIEFYWNGGEGAVTGVNKIEL-PQFSIVDYKMVSKKVEF---TT---- 227

  Fly   241 DGDNLRHGAFAGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTS 305
                       |.|..||.:..|||.||:::|..|:||.:|..:||||||:..|||..|:.||.:
  Rat   228 -----------GAYPRLSLSFRLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGIT 281

  Fly   306 TMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIW--------------- 355
            |:|:..|:|:...:.|||:.|:|..:::.:||..|:|.:|:|:||||.|:               
  Rat   282 TVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGKGPQKKGASKQDQ 346

  Fly   356 --RRKENIELKKVN---SKYIIKSTLTPRPARRQIGGS--LSNESRARSCS-SLDNI-------V 405
              ..|..:|:.||.   ...|:.|||   ..|.:..||  |:..|..::.. |.|:.       :
  Rat   347 SANEKNKLEMNKVQVDAHGNILLSTL---EIRNETSGSEVLTGVSDPKATMYSYDSASIQYRKPL 408

  Fly   406 SSTESVRNGNGTVNQGFNNYLTVH--PNLPIIRTECAEADTVSICSARTNNDHIVDVDKDKKDTP 468
            ||.|           ||...|..|  |....||...::        .:.....:.||:.      
  Rat   409 SSRE-----------GFGRGLDRHGVPGKGRIRRRASQ--------LKVKIPDLTDVNS------ 448

  Fly   469 PTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYWTFVYV 508
                          ||:.||..||..|..||.:||.: ||
  Rat   449 --------------IDKWSRMFFPITFSLFNVVYWLY-YV 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 134/490 (27%)
Neur_chan_LBD 44..267 CDD:280998 57/220 (26%)
Neur_chan_memb 275..503 CDD:280999 72/259 (28%)
Gabrb1NP_037088.1 LIC 9..472 CDD:273305 134/492 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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