DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecCl and acc-2

DIOPT Version :9

Sequence 1:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_501567.1 Gene:acc-2 / 183758 WormBaseID:WBGene00008280 Length:445 Species:Caenorhabditis elegans


Alignment Length:470 Identity:113/470 - (24%)
Similarity:204/470 - (43%) Gaps:93/470 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 QQTQLIQRLTHVCRYDRLERPFEYDSDGKRLPIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQ 107
            :.|.:|.||.:...|::...|.|     :.:.:||:  |::..:.:::.....|.|...:...:.
 Worm    49 RDTDIIDRLLNGTGYNKFRIPQE-----EGMTVVVE--IWIQAITSIDELTNDFDMDIYITETWL 106

  Fly   108 DKRLAYKAFNRSDNILGQKH-LSERLWLPHIFFANERESSILGTDEKDVLTSLSPEGNVIISTRM 171
            |..|.::........|...| :.:|||.|:..|.|.:.:.|..:..:.|...|.|.|.|:::.|:
 Worm   107 DPALNFQTMTPCKGNLSLNHQVLDRLWTPNSCFINSKVAQIHNSPFRSVFLMLFPNGTVMVNYRV 171

  Fly   172 QASLYCWMNFQKFPFDQQFCSTVLESWMYNTSDLILEW-EPHTPISFDPEMRLTEYNMAQFWHNT 235
            :....|.::...||.|.|.||.:.||:.||..::.:.| :...|:....::.|.::::.:     
 Worm   172 RVKGPCSLDLSNFPLDLQKCSLIYESFNYNRQEVEMRWSDAEHPVFNLSKIMLPDFDLFE----- 231

  Fly   236 TIVQSDGDNLRHGAF-AGNYSSLSFTVNLKREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPR 299
              :|::   .|...: ||.:..|..|:..:|...:|.:..|||:.:.:.|||:||.|.:.|.|.|
 Worm   232 --IQTE---RRQEPYPAGMWDELHVTIIFERRFIWYFMQAYLPTYLTIFISWISFSLGSRAIPAR 291

  Fly   300 IMLGTSTMLSFITLSSSQSKNLPKVSYIKVSEVWFLGCTFFIFGSLVEFAFVNTIWRRKENIELK 364
            .|||.:::|:.:....:..:|||:|||||..:||.|....|||.||:|.|.|..:.|        
 Worm   292 TMLGVNSLLAIVFSFGNIMRNLPRVSYIKGIDVWMLVSMTFIFCSLLELAIVGFMVR-------- 348

  Fly   365 KVNSKYIIKSTLTPRPARRQIGGSLSNESRARSCSSLDNIVSSTESVRNGNGTVNQGFNNYLTVH 429
                    ..|:..:..:::|.|::|.|      .|...|:|....                   
 Worm   349 --------DETVAKKKQQKKISGNISRE------ESPHGIISERRF------------------- 380

  Fly   430 PNLPIIRTECAEAD-TVSICSARTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPA 493
                :....|:|:. ::|.|:                      :..||:.    ||..|..:||.
 Worm   381 ----MFPPGCSESSKSLSSCT----------------------SGWTPER----IDSISSVMFPF 415

  Fly   494 MFLAFNALYWTFVYV 508
            .|..||.:|| |.|:
 Worm   416 SFFVFNIIYW-FYYI 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecClNP_001261986.1 LIC 43..505 CDD:273305 111/465 (24%)
Neur_chan_LBD 44..267 CDD:280998 50/225 (22%)
Neur_chan_memb 275..503 CDD:280999 58/228 (25%)
acc-2NP_501567.1 Neur_chan_LBD 51..258 CDD:308532 49/223 (22%)
Neur_chan_memb 267..>347 CDD:308533 35/79 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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